HsaINT0152346 @ hg19
Intron Retention
Gene
ENSG00000160326 | SLC2A6
Description
solute carrier family 2 (facilitated glucose transporter), member 6 [Source:HGNC Symbol;Acc:11011]
Coordinates
chr9:136340522-136341458:-
Coord C1 exon
chr9:136341359-136341458
Coord A exon
chr9:136340734-136341358
Coord C2 exon
chr9:136340522-136340733
Length
625 bp
Sequences
Splice sites
5' ss Seq
TTGGCAAGT
5' ss Score
2.72
3' ss Seq
CACCCACCCCTCGCCCCCAGGCC
3' ss Score
9.92
Exon sequences
Seq C1 exon
GTGTACGTGTCTGAGATTGCTCCCCCAGGCGTTCGTGGGGCTCTGGGGGCCACACCCCAGCTCATGGCAGTGTTCGGATCCCTGTCCCTCTACGCCCTTG
Seq A exon
GCAAGTATGGCCCCGCACTCCTGTGTGCAGGCTGGTGGGAGGGGTGGGTGCCGCCAAGGTAGACGTGGGTGGAAAGGGAATGATTTGTCCCAGAACAGATCCTGGGCTGAGAGGCAAGAGATCTGGCATCCCGGCCCCACTCAGTCAGCACCTTGCTGGGCACCTCCAGGCAGGGCCTGCCCCTCTAGCCACAGGCCCAGTCTCTAGCTGGGGCAGCCAGGGCTTCTCCTGGACCCACAGTCGCCAGACTATCTTTTAACGGCAGAAAGCTTCCATCAAATGCCATCTCAGATGGGAAGTCCAGATAGAAAAGAAATCACAGTGCGTGCAGCTGCTCAGTTGAGGGGGCGTGGAGGTCTTGGGTGGAGGCCTAGGGCCTTGCCTGCCCAACCTACCCCTTCCTCATCCTGCCCTGGCCCTAAGACTTTCCAAGGACTTCCCACTATGTGCCAGGGGCTGAGCAATCCCTGCAGCCCCACCCTGCCTGGGGCAATCAGGGTAGGCTTCCTGTAGGAGATGGCCCTTGGACTAGACCTTGAAGGGCAGATGAGGTTATTCAGAGGCTCCAGAGGGAAGGGGCTGTACCAGGCCTGGACCTGGCCCCTCACCCACCCCTCGCCCCCAG
Seq C2 exon
GCCTCCTGCTGCCGTGGCGCTGGCTGGCTGTGGCCGGGGAGGCGCCTGTGCTCATCATGATCCTGCTGCTCAGCTTCATGCCCAACTCGCCGCGCTTCCTGCTCTCTCGGGGCAGGGACGAAGAGGCCCTGCGGGCGCTGGCCTGGCTGCGTGGGACGGACGTCGATGTCCACTGGGAGTTCGAGCAGATCCAGGACAACGTCCGGAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160326-SLC2A6:NM_001145099:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.031
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=FE(10.8=100)
A:
NA
C2:
PF0008319=Sugar_tr=FE(15.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACGTGTCTGAGATTGCTCCC
R:
CTGTCTCCGGACGTTGTC
Band lengths:
310-935
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)