BtaINT0135282 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020351 | SLC34A1
Description
Bos taurus solute carrier family 34 (sodium phosphate), member 1 (SLC34A1), mRNA. [Source:RefSeq mRNA;Acc:NM_001103223]
Coordinates
chr7:40241025-40241368:+
Coord C1 exon
chr7:40241025-40241153
Coord A exon
chr7:40241154-40241224
Coord C2 exon
chr7:40241225-40241368
Length
71 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
3' ss Seq
TGCTGGCTTATGTTCCCCAGGGA
3' ss Score
6.89
Exon sequences
Seq C1 exon
AACCCGGACTGGTCCAGAAGCTGCACCGGGCTGGCGTGACTCTCCTCAAGGTGCCACTGATGCTTTCCTTCCTCTACCTCTTCGTCTGCTCCCTGGACGTGCTCAGCTCGGCCTTCCAGCTGGCTGGAG
Seq A exon
GTAGGACAGAGGGGAGGGAGCCAGGGAAGTGGCCCGAAGCGTCTCGGACAATGCTGGCTTATGTTCCCCAG
Seq C2 exon
GGAAGGTGGCTGGCGACATCTTCAAGGACAACGCCATCCTGTCCAATCCGGTAGCGGGCCTGGTGGTGGGGATCCTGGTGACTGTGCTGGTACAGAGCTCAAGCACCTCCACATCCATTGTGGTCAGCATGGTCTCTTCTGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020351:ENSBTAT00000027121:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=PU(11.7=38.6)
A:
NA
C2:
PF0269010=Na_Pi_cotrans=FE(33.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCTCTTCGTCTGCTCCCTG
R:
GATGTGGAGGTGCTTGAGCTC
Band lengths:
170-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]