MmuINT0146263 @ mm9
Intron Retention
Gene
ENSMUSG00000021490 | Slc34a1
Description
solute carrier family 34 (sodium phosphate), member 1 [Source:MGI Symbol;Acc:MGI:1345284]
Coordinates
chr13:55502286-55502631:+
Coord C1 exon
chr13:55502286-55502414
Coord A exon
chr13:55502415-55502487
Coord C2 exon
chr13:55502488-55502631
Length
73 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
3' ss Seq
CACTGGCTTCTGTTCTGCAGGGA
3' ss Score
8.17
Exon sequences
Seq C1 exon
AGCCCAGGCTGTCCCAGAAGCTTGCCCAGGTTGGCACGAAGCTCCTGAAGGTGCCTCTGATGCTGGCTTTCCTTTACCTCTTTGTCTGCTCCCTGGATGTGCTCAGCTCCGCCTTCCAGTTGGCTGGAG
Seq A exon
GTAGGGCCCAGGTGGAGAAGGGCAGGGAAAGGGTTCAGAAGGGTCTCAGTTGACACTGGCTTCTGTTCTGCAG
Seq C2 exon
GGAAGGTGGCTGGGGACATCTTCAAGGACAATGCCATCCTATCCAACCCAGTGGCAGGGCTGGTGGTGGGGATCCTGGTGACAGTTCTGGTGCAGAGTTCCAGTACCTCTACATCCATCATTGTCAGCATGGTCTCCTCCGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021490-Slc34a1:NM_011392:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.114 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=PU(11.7=38.6)
A:
NA
C2:
PF0269010=Na_Pi_cotrans=FE(33.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAAGGTGCCTCTGATGCTG
R:
CTCTGCACCAGAACTGTCACC
Band lengths:
182-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: