BtaINT0135298 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001545 | SLC34A2
Description
solute carrier family 34 (type II sodium/phosphate cotransporter), member 2 [Source:HGNC Symbol;Acc:HGNC:11020]
Coordinates
chr6:46739780-46742278:+
Coord C1 exon
chr6:46739780-46739891
Coord A exon
chr6:46739892-46742082
Coord C2 exon
chr6:46742083-46742278
Length
2191 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
GTGGGGTTCTCCTCCTGCAGGGC
3' ss Score
8.85
Exon sequences
Seq C1 exon
TGCTGCCCGTGCATGCTGCCATCCCCATTATCATGGGAGCCAACATTGGGACTTCAATTACCAACACCATCGTGGCGCTCATGCAGGCAGGAGATCGGAAAGAGTTCAGAAG
Seq A exon
GTAGGAGGCTTGGAGTCATCCTTGGCCACCACCAGGCCCATATGGGGGTTGGCCAAGTTTTCCTAACTGTCGTTGACAAGAGAGCATGTTTGTTATCCCTGGGCCTCTTAGAAGTAGCTACAATGAAGTAGGGCTGGAGGCTGGGATCACATACTTATCAGTTGGTAACTCAGCTCCCTGACTTGCAGAGCTTGGATAACAGAATCTATCAACCTCCATGTTGCCTAAAGAAATTAACACATTCATATAGATAAATACTTAGCAAGGTGCCTGGCACCTAGTCAGGGCTGCCTGAGTACAAGTGTTAGCCAGAAGCTTGACCTGTGGCATAGTTAAAACAAGGCCAGGTAGAATAGCATTTACTATCTCACTTGGAAATAATTATAACTTTCTAAAGCTTCCATTAAACACAATTCCCAGCCTCTCTTCTGACTGGTTATGGGTTTTTCCGGAGCTTGTTACAATAGTGAAATAGTCCCCATCCAACAAAGCCAAAAACACCAATTTGAAAAGGTACAATGCACCCCCAGTGATCATAGCAGCATTATTTAGAATTGCCAGGATATGGAAGCAACCTAAGTGTCCATCAACAGACGAATGAAAGACGTGATCCATCTACACACACACACACACGTACACATACAATGGAATACTACTCCTCAGCCACAAAAAAGAACAGATTTTTGTCATTTGAAGCAATATGGATGAACTTGGAGGGCATTATGCTAAGTGAAATAAGTCATACAGGGAAAGACAAAAATTGCATGATATCACTGATATGTATAATCTAAAAAATACAACAAACTAATGAATAAAACAAGAAAGAAGCAGACTCACAGATATGAGAACAAACTAGTGGTTACCATTCGAGAGACGAGAGGGGGATGAGCAAGACAGGAGTAGGGAAATAAGAGGTACAAACTATTAGGTATAAAATACGCTGTAGGACATAGAGCCAATATTTTCTAATAACTATAAATGGAATAAAACCTTTTAAAATTGAGTCACTGTATTGAACACCTGCGGCTTATATAATATTGTACACCAGCTATACTGCAACTGTCACATCAGGAAGGTGACATTAAACAGGCTGGGGGGGTGGTCAGTAAACACCATCCCTCGTCCGCGGTGCACTGGCGGGCACCGGATGTCCTCAGCCGTTCAGTTTCTGTCAACCATAGCTGAACTCCTGGTCCATGATAAAATGCTCTGAGGTCTAAATTATAATACGTATCACCCAGGGTGTTTGCTAATTTGATCTTAAGAAACTGAGTAGAGTTTTCTATGCACTATTTTATTAAATATAGAAGCACAAAGAGGTTAAGTAACTTCGCTGAGGGGCATAGCTGGGACTCAATCCAGGTTTTCTTATTAGAAATTCTGGGTTTCTTTCACTGTTACACTAATTTTTACCTCTGGATATATAAAGATGAAAGTGCGTACACATAGAATATAATTGATCTAGCTCACCCCCTTCTGAGATATTTAAATAGATTGCTTTCAATAACATCTTTGGAGATGTGTATTATTCTTTTCTGGTCATTTTTTCCTGGATAGATTCCTGAAACAACAACAACAATTATATCAAACACCTATAAAGCTTTTTTAACAGTTTTCCAAACTACAAAGAAATATTTGTAACACTTGAGTCAGCAGTGTATGAAAATGTCTTAAATCACCCTCTCCAGGAAGCATAAGTAAAAATTTGTACTTGCAAACAAATAGCAAATTTCTAAAGGAAAATTGTGTTCAGTATGCATGATTCAGAAGTAGTCTTGATGACGTTTTTTCAAACAGCCCCTTGCTGAATTAATAATTGCAGCCAAAATAACCTCTATTGATAGTTCCCTTTCCCCCACACAGAGCAAACTGTCTACTGTCTAATCTGGTGGGAAATGTTCTGTCAGGCAGTAGGAGATGAGATTCCTGGACCCAGTACTGCTGCAGTGATCTTCAGTTCCTCTGTTTGCTGGTCCTCAATTTCTTCATCTGATGATTGGTGGTGGGGCAGGGGGAGGGTAGTATTAATACCACTCACTTTGGGGATTGCTATAAGAAGAAAAGTGAGATTGTATACCTATATGCATATAGGTAGGTGACACCTGGCAGATAATACAAGTGATGACCTGCCTAGATGGTACCCAGCCACTTGATGACTGGTCTGACTCGGGGTGGGGTTCTCCTCCTGCAG
Seq C2 exon
GGCCTTTGCGGGGGCCACCGTCCATGACTTCTTCAACTGGCTCTCCGTGCTGGTGCTCTTGCCTCTGGAGGCCGCCACCGGTTACCTGGAGCGCCTGACCAACTTAGTAGTGGAGAGCTTCCACTTCAAGAATGGAGAGGAAGCCCCAGAACTTCTGAAAGTTATCACAGATCCCTTCACAAAGCTCATTATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001545:ENSBTAT00000002023:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=FE(26.4=100)
A:
NA
C2:
PF0269010=Na_Pi_cotrans=PD(26.4=56.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]