HsaINT0152515 @ hg38
Intron Retention
Gene
ENSG00000157765 | SLC34A2
Description
solute carrier family 34 member 2 [Source:HGNC Symbol;Acc:HGNC:11020]
Coordinates
chr4:25667880-25669842:+
Coord C1 exon
chr4:25667880-25667991
Coord A exon
chr4:25667992-25669646
Coord C2 exon
chr4:25669647-25669842
Length
1655 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TCGGGGTTTCCCTCCCATAGAGC
3' ss Score
8.26
Exon sequences
Seq C1 exon
TGCTCACTGTTCGGGCTGCCATCCCCATTATCATGGGGGCCAACATTGGAACGTCAATCACCAACACTATTGTTGCGCTCATGCAGGTGGGAGATCGGAGTGAGTTCAGAAG
Seq A exon
GTAAGAGGCTCAAAACCAGCCTTTGCGACATCAGCTCTATTGTTCTTGGCCACGCTGTTGTAACTGCTTTTAACCAGCCAAAGATGACATGCTTATCAGGTTCATTCCTGGAGTTCCTAGAAGTAACCACAGGGAGGTATGGCTAGGGTTGGATCACATACTCACCAGCTGATTAGACTCAGCTCCCTGATCGGCAGAGCAGGGATAATACTATCTATCACTACTGAGTTGTTGTAGGATTAAATATACAACCCAGCAGGTGAGTGTTCAGAGCACCCAGCACATTGAGTTCACTAAATAAATGCAAACTCTAGCTAGAAACTTAGCCGCTGGGTGGCGGAATTGAAGCAAGGCCAGTTAGAAGAGTAGGATTTATTGGGACTGGGCGTGGTGGCTCATGCCTGTAATCCCAGCACTCTGGGAGGCCCAGGCGGGTGGATCGCCTGAGGTCAGGAGCCTGGCCAACATGGTGAAACCCCATCTCTTCTAAAAATACAAAAATTAGCCGGCCGTGGTTGCCAGCGTCTGTAATCCCAGCTACTCTGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGCGGAGGTTGCAGTGAGTCGAGATCGTGCCACTGCACTCCAGCCTGGGTGACAGAGTGAGACTCCATCTAAAAAAAAAAAAAAAAATAAATAAATACTGTTTTGTTTGGTCATAATTATAACTTATTTAAACTTCCACTTTCGGTCAGCTCAACCCATGCCACCTTTTCTTTGTTCTTCACTTACAAGTTAATAAAAAACAAAACCTAGTTTCTGCGTATGCAGAAACTCTGAAACTAGAGCAGGTAGAATGCTGGAAACTCTTTTCTTTCAAAAAGGTTAATGTGAAAATTAAGTGTTTCTTAGCCTCTTCTAGCTAGTTTTTTTTTTTTTTCAGTTTTTTTTTAAAAGGTAAGCTGTTTCATTGAAGACATAAAAATCCAGAACAGAGTTTTTTAAATCTGGAGATAAGATGGAATCGAGGAGGAATCTTTGAACCTCCTCAGATGGATGCAAAATGTTTTAGCCTTGTTTCCCATGGAAACTATTCATGTTTCATCACTTTCAAGAACTTAAAAAAAGTTTAAGAATTCACTTGCATAGAGGTCTTTTTAAGTTAAATTTTTTTATTGATACAAAATATTTTTACACCTTTCTGGGAAACATGTGATATTTTGTTACATTCATAGAATGTGTAGTGATCAAATCAGGGTATTTGAGGTGCCCACCGCTTTGGGGATTTATGATTTCTATGTGTTTGGAACAATTGAAAACTCCAGCATAGAGGGCTTTGGTTGCCTTCATACTGGTCCCCACCTTTCCAAAAGAAGGTAGCCTTCAATATACATGATACAAAAGTGCCCTTGATGCAATTCTTCGAAACAGTGATTGCTGAGCTAATTATTCCAGCCGTAACATGCTTGCTGGCCCGCAGCTTCTTCATCTGGCCAATGGGAATATAGATACCAGCCACTTTGGGGATCGATATGAGAGAACAAAAATGAGATTGTGTACATGTGCACACTTCCATAGGTGACACCTAGCAGAGGGTGGCAGATGATACAGGTAATGACCCACCTCACATGGTGCCCACTTGCTTAGTGACTAATCTGGCTGTCGGGGTTTCCCTCCCATAG
Seq C2 exon
AGCTTTTGCAGGAGCCACTGTCCATGACTTCTTCAACTGGCTGTCCGTGTTGGTGCTCTTGCCCGTGGAGGTGGCCACCCATTACCTCGAGATCATAACCCAGCTTATAGTGGAGAGCTTCCACTTCAAGAATGGAGAAGATGCCCCAGATCTTCTGAAAGTCATCACTAAGCCCTTCACAAAGCTCATTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157765:ENST00000382051:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=FE(25.7=100)
A:
NA
C2:
PF0269010=Na_Pi_cotrans=PD(28.5=62.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCACTGTTCGGGCTGCCAT
R:
ACAATGAGCTTTGTGAAGGGCT
Band lengths:
302-1957
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains