BtaINT0136071 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014975 | SLC4A3
Description
solute carrier family 4 (anion exchanger), member 3 [Source:HGNC Symbol;Acc:HGNC:11029]
Coordinates
chr2:108280613-108281499:+
Coord C1 exon
chr2:108280613-108280831
Coord A exon
chr2:108280832-108281350
Coord C2 exon
chr2:108281351-108281499
Length
519 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGG
5' ss Score
7.65
3' ss Seq
CTGACCTCCACTCGCTCCAGGGG
3' ss Score
7.58
Exon sequences
Seq C1 exon
AACTGTCAATGGAACTGGGGGGCTCTGAGGCCACCCCTGATGATGACCCCCTGCTGCGGACTGGCTCGGTGTTTGGGGGGCTTGTCCGGGACGTGAAGCGCCGGTACCCGCACTACCCCAGCGACCTGCGGGACGCCCTGCACTCCCAGTGCGTGGCCGCCGTGCTTTTCATCTACTTCGCTGCCCTCAGCCCCGCCATCACCTTCGGGGGGCTGCTAG
Seq A exon
GTGAGGGGCAGGAGGAGAGGTGAGGGGACTCAGTGTCACCTGCAGCATTCCTGGGCCAGGGGGTCCCATGGTCACTTCTAGGATGCCTGTAATGTGAGAGGGAGTGGGGCATCCGGTCACCACCCTGGGGGGCTGGTGCTGACGGTGCTGCTGGTAGCCCTGTCTACCACTCTGGGGGGCACTGCTCTGTATTTCCTGGGTCCCCAGGTTAGGGGAGGGCTTCCCTGGTGGCTCAGATGGTAGAGAATCTGCCTGCAATGGGGGAGACCTGGGTTTGATCCCTGGGTTGGGAAGATTCCCCTGGAGGAGGGCATGGCAGCCCACTCCAATATTCTCGCCTGGAAAAATCTCTATGGACAGAGGAGCCTTGCGGGCTACAGTCCATGGGGTCGCAAAGAGTCGGTCATGACTGAGCGACTCAGCACAACACAGCACAGGTTAGGGGAAGCTAGTTGAGAAAGGGGGGCCAGGTGGAAGGAGCTGGGCAACAGCCATCCCACTGACCTCCACTCGCTCCAG
Seq C2 exon
GGGAGAAGACGGAGGGGCTGATGGGTGTGTCTGAGCTGATCGTGTCCACGGCTGTGCTTGGCGTCCTCTTTTCTCTGCTGGGGGCCCAGCCGCTGCTCGTGGTCGGCTTCTCTGGGCCACTGCTCGTCTTCGAAGAAGCCTTCTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014975:ENSBTAT00000019936:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.149 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=PU(28.5=77.0)
A:
NA
C2:
PF0095516=HCO3_cotransp=FE(24.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTGTCAATGGAACTGGGGG
R:
CGAGCAGTGGCCCAGAGAAG
Band lengths:
345-864
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]