BtaINT0136076 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014975 | SLC4A3
Description
solute carrier family 4 (anion exchanger), member 3 [Source:HGNC Symbol;Acc:HGNC:11029]
Coordinates
chr2:108283713-108284590:+
Coord C1 exon
chr2:108283713-108283879
Coord A exon
chr2:108283880-108284336
Coord C2 exon
chr2:108284337-108284590
Length
457 bp
Sequences
Splice sites
5' ss Seq
CGCGTGAGG
5' ss Score
4.08
3' ss Seq
TCACCCCTGCTCTCCCCCAGGCT
3' ss Score
9.53
Exon sequences
Seq C1 exon
AAGCTGACGGTGCCCACGGGGCTCTCGGTGACCTCCCCCAGCAAGCGCACGTGGTTCATCCCGCCCCTGGGCAGCGCGCGTCCGTTCCCGCCCTGGATGATGGTGGCGGCCGCCGTGCCCGCGCTCCTGGTCCTCATCCTGATCTTCATGGAGACACAGATCACCGC
Seq A exon
GTGAGGGGACTGGGCGGGCCCCGGGCGGAGGAGGTGGGAGAGGAGTGGGGTTGGGGGACTGGCAGCCCCTGGGGGACGGTCCCTGGACCTGGGCACGGTGTCCCCGTGGTGCTCTGAGAGGGTATCTGTCGCCACCACTGCTTGCAGGGTGGCACTTGACAGTCCTCAGAACACCCTGGCAGCAGCATGCTCTCTCAGTCTGTGATCCTCACATGTGTCTCATTTTGGTTAAACCACAATGACGTGGTGAGAGTTGGCATCTGGCTTTTGTGGTATTTGAGTATCCACAGTATTGGGAATTTGCCTCAAACTTGCTTAAATGTGAGAACTTCAGTTTGAGAGCTTGGAAGAGAAAGCTGGCAGGTCCTGGCGGACAGCCTCTGCTCTGCATGTCCTCCGCCCACTTCTGGTCCCTGCTGGGTGTGCCCACCCACCCCTCACCCCTGCTCTCCCCCAG
Seq C2 exon
GCTCATCGTTAGCCAGAAGGCACGGAGGCTGCTCAAAGGCTCTGGCTTCCACCTGGACCTGCTTCTGATCGGCTCCCTGGGTGGGCTCTGTGGCTTGTTTGGGTTGCCCTGGCTCACAGCCGCCACCGTCCGCTCGGTGACCCACGTGAATGCGCTGACTGTTATGCGCACTGCCATTGCGCCCGGCGACAAGCCCCAGATCCAGGAAGTGCGGGAGCAGCGGGTCACTGGAGTGCTCATCGCCAGCCTTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014975:ENSBTAT00000019936:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(18.5=100)
A:
NA
C2:
PF0095516=HCO3_cotransp=FE(28.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCGCACGTGGTTCATCC
R:
CTCCCGCACTTCCTGGATCT
Band lengths:
342-799
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]