BtaINT0136146 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018227 | SLC4A7
Description
Bos taurus solute carrier family 4, sodium bicarbonate cotransporter, member 7 (SLC4A7), mRNA. [Source:RefSeq mRNA;Acc:NM_001098926]
Coordinates
chr22:1779813-1782709:-
Coord C1 exon
chr22:1782604-1782709
Coord A exon
chr22:1779975-1782603
Coord C2 exon
chr22:1779813-1779974
Length
2629 bp
Sequences
Splice sites
5' ss Seq
TCTGTGAGT
5' ss Score
7
3' ss Seq
TTTTCACCCCCTTTTTTCAGGAA
3' ss Score
11.38
Exon sequences
Seq C1 exon
ATGTGTGTGTGTTGAGCCTTCTAACCCTGGCAATGAAACGCTGAAGATGTGGGAGAAAAATAATGTGACAGCCCGTGACATTCCCTGGGGGAACCTCACTGTGTCT
Seq A exon
GTGAGTATAAATGAAGCGAAGGCTGGTGCAAACAATTAACCTTGTTCTTGAGCTTTTTCTGAGTAAAATGAAGTGAAAGTCTCTCAGTTGTGTCCGACTCTTTGCGACCCCATGGACTATACAGGCCAGAATACTGGAATGGGTAGCCTTTCCCTTCTACAGGGGATCTTCCCAACCCAGGGATCCATCCCAGGTCTCCCGCATTGCAGGCGGATTCTTTTTACCAGCCGAGCCACCAGGGAAGCCCAAGAATACTGGAGTGGGTAGCCTATCTGTTCTCCAGTGGATTTTCTCAGCCCAGGAATTGAACTGAGGCCTCTTGCATTGCAGGTGATTCTTTACCAGCTGAGCTACATGGGAAGCCCCTTTCTGAGTAAACCTACGTTTTCTTCTTGATTGGTGGATATTGTTTTTAGAATATAGTGTTGTGTTGACCAAATAGGAATTACCACATTTTTTAAAATCATGTCCTGAAGTGTAGAAGCTGAAAAAAAGTGAAACAGAGATCAAGGGAAGAGAGATCAAGATGGACTATATTTGGCTTCCAGGATACTGAAAAAAAGAAGTGAAAGTGTATTGAACCTGGGTCTTCTGTGTTGCAGGCAGATTCTTTAACATCTGAAAGCACCAGGGAAGCCCTCCAAGATATTAATTATTGGAAAGATGTGAATATGCTTTCGGGTTTCTAGTTCCTCTTGGATTCATAGGCTCATCGGCCTATGGTTGCAGGTCCTGAAGTTAACAGTTCAGCAGCTCGCACTTGTCCTGCTTCTGTTGTTCAGGCTATCTCTCTGGGACCTGCCTATTCAGGAGATCAGGGATGCTCAGATTGAACCTGTTTACCTTGAAGAAACTAGTTTGACTTGAGCACTGGCAGAAAGAAAAGGAAGAAAAGGGTAGAAATGTATAATGAGCACCTACTGGGTACTGAAGACTGTTACACACATATTTTTGTATTTTGTTGGGAAATATTGTCCTAGCCCTAGAGTAGCTGTTTTGGTCACTTCCCAGATTGGGATTTAGAAATAAAGGTGTCCAGTGACGCTAGCAGTATCAGTGAAAACCCACCATCCCCTGAGCTACTCTGGTGCTTTTTATATCATGTAAGCAATTGTAGGTCATTCCTTTCTCTCTTAGGGTGATAGTTAGCTCCTGAGTATGTAGTTGGAGGGATTTCATTTGCAGTGTTATCCCACCGATCATTTACATCTGCGCCGTGCAGTGCAGTCACGTGTCTATATTTAAGTGTACATTAAATAAAATTAAAAGTTGAGTTTCTTGGCTGCACTAGACGTGCTCCAAGTGCCCAGTCCTGTCATGTGACTGACTGCTGGCCAGTTGTATGGGCAGTGTAGATTTATGACATCTTATCAACACGGATGGTTCTGGGGACAGTGTGGACACACAGCACTGTGTCAGTAAGTCATCAGCTTAGAATAATGCTGAACTATTGTATATTGAAAAAGTAATTTTTGTTCTGAAAGAGAGTTAATGCTGCTGCTGCTGCTGCTAAGTCGCTTCAGTCGTGTCCGACTCTGCGACCCCATAGACGGCAGCCCACCATGCTCCCCCGTCCCTGGGATTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATTTCCTTCAGGTTTTCAAATGAAAGTGATTTGTTAAAAAAAATAAAAACAAAAAAACTCATTTCATGTTGAATAGGATGTCTTAGTATTTCAGCTTACTTACATGGTCTGTTCAGTGTGGTTTTTTAGATACCTAATAGGGCCATGTTGAGTTTCTTTGTATAGCTGTAGCTTTTATTTCTATGATCCCTGTTGTAAACTGTAGATTACTAAGGTTAGCACACAGAAATTGAGAATAATGGATTCTCCTTTGGCTAATTTTCTTTCAGTAAACCTGATCTGTTACGTTTTGAAAATGAATCTCATTAGAATATAAGTAAAGAGAAAAGGACTTCAGTTGTTTTCATTAATCTCTGCTTGTCTTTCAGTTATTCTTTTCCCTCAAAAGGAAAATCAAGTCAATATATTTCCGTAATTGTGCTATACTATTGATTATATTATTGATTTTATTAATGGAAATATTTTGGTGGTTCACTTTACTGCTTTAATCTCACCTTTAGAAAAGTCAGAAAAAAGTCAAATAAGCCAAAACAATTTAGTATTATAGCCATCTCTTATTCAGCATTGTAAGGGCAGAGTAGTAATTTTCTGACTTTTGATTTTATTTTAAGCAACTTGTTCAAAAGTAATGGAAAGATAGTAAAATTGCTGACCAAGGATGCAAACAAAATATTTGGGAATTAATACTCAATATGTAAACCTCTCACTAAAGGAAATAAAGAGTTGAAAGAAGGGAGTGTGTGACATAGTAACTTGACAAAATACATTGTTTTATTTCAATGATTTCTAAGAGGCACAGATTTGTCTAATTGTTACCTCTCTGAACTCAAGATGTGTTTTAAAATTGATTGTGTTTTAATGTTGACTTGATGGTGTGTTTTTCTAAGTGAAACAAAATAATGGCGTGTCTTTTGATGAGTAGCATCTTACTTCAGAGAAGTTCCTCGTTAATTTATTGGCTATCTGAGAATCCCCTTTATCCCTCCCTTTTCTGTTTTTCACCCCCTTTTTTCAG
Seq C2 exon
GAATGTAAAGTCTACCACGGTACATTTGTAGGATCAGCTTGTAGTCTCCATGGACCTTATATTCCAGATGTGCTCTTTTGGTCCGTCATCTTATTTTTCACAACGTTTTTTCTGTCTTCATTCCTCAAGCAATTTAAGACCAAGCGCTATTTTCCTACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018227:ENSBTAT00000065868:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(14.5=100)
A:
NA
C2:
PF0095516=HCO3_cotransp=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]