BtaINT0136176 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017950 | SLC4A8
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 8 [Source:HGNC Symbol;Acc:HGNC:11034]
Coordinates
chr5:28481453-28484274:-
Coord C1 exon
chr5:28484161-28484274
Coord A exon
chr5:28481615-28484160
Coord C2 exon
chr5:28481453-28481614
Length
2546 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
3' ss Seq
ACCTTGCTTTTTCCCTTTAGCCA
3' ss Score
8.91
Exon sequences
Seq C1 exon
GTCCGCTCCATGGTGAGTGACTTTGCTGTTTTCCTCACTATCTTCACAATGGTGATTATTGATTTTTTGATTGGAGTCCCATCACCCAAGCTTCAGGTTCCCAGTGTGTTCAAG
Seq A exon
GTAAACAGATCTTAGGGTACTCGGTGCCCTTATGTAGTTCATAGACTCTGATCCCGAGTTATTTCAGGGGCCTCTCCTTATCCTAATCATGTATTTTGTAGTCCTCTAAATCTGAGTTGTGCTGCTCACGCCATACCATTCAGAAAAGCAAACTCTTCAGGCTTAACTGAGTTCAAATTAGAAAAGTCAGAAAACCTAATGTTGTTTAATGAATGAAAAGCCTTATTTATTTTCTTAATGCCATTTATACAATGAAATATGAGAACTTGCCTGGTGGTCCACTGGCTAGAACTCCATACTCCCAATGCAGCGAGCCGGGTTCGATCCCTGGTCAGGGAACTAGATCACACATGGCTCAACCGAGAGTTTCCATGCCACAGCTATTAATAAGATCCAGTGCAGCCAAATAAATAATTAAAAAATAAAACAAAGGAATATCTGTATTTACGTAAACATATACCAAAGACTGTGGGAATGTGGGTCTCTGGAACAAGTTCTGGTTCCCAGCACTTCACTGAGCATCAGCTGTCTTAGGAAATCAGGAAGGGTGAAAAGGCTCTTTGTAGGCCTCAGTCCTGCTCCTCAAGTATCTTGCCCCATGAGGAGGTGAGGCGGTGGAGGAGCTTCACCCTCATTCTAGGGCCCCCACCAGAGTAATCGTGACCTCTCTTCAACCCTAATTCATTGTTTGTATATCTGTCTATAATCAATACTGTTGATCCAAAAATCTATACAAAAAGTAAAACAGATGATCTACACATGGGGACTCGGATCTGGGGGTACCTACTGAGGAAACTGAGAAGATAGAACAGCTGAGCTCAGTTCCACAGATCCCCACAGGGTGGGGAGAGGAGGAAACCTGGGTGTCCTTGGGACCGGAGAGGAGCCAGGAGAGGAGGGAATGGGGAGGCTGGGGAGGAGGAGGAGGCCGGGAACACAGGCCCGTGGCAACTTGTAAACACCCAGCATAGTCGGCCTTCGTCTTCCCTTTCTGTCTCCCTGAAGCAGGCCTGGTTAAAAATATCTTTTTCTGTAATTGCTTGAAAAAATTTTATTTTGTTTTGTTAAATTCAACTGAAATGCCATCCAGTTAGAAATTGATGGATTAAAAAACATACTCTTTAAAAGTATATACCTCCTATAATATATATCATTCTCACCCTGTGTGAATGAGTGCGGTCAGCTTTTTCTCTAATAGCTGGCTGAGGTCGACAATGCAGGAGGAATGGCTTTTGTGTAAAAATAAGTACTCGGAGCATTAAGCAGTTCTTGGAAAGGTTTCCTGATGGGTAGGCTTCAGATAGTCAGAAGGCACTGCATTTCTGAGACATCTGGGAAGAAGGCCTCTGGAAGATGGGAGAGACGTCAGAGAAAATGGGAGAATGTCAAAGGCAGTGCTGCTCATTGGCAGGCCTCCCTTTCAGGAAGCAGAGAGAACATTTTCTTCTTTTTTCTCTTCCCTATTACACCACATCACCCCCAATGACCAAGACCCAGTCTGAAGGCTAGTACTATTATTGATGGGTGAGTAGGACACGACTGAGCGGCTGAACTGAACTGAATGTCAGTCAGGGATTAATACGTTTTTGTGTTGACCTAACAATTTAACTACCATTTAGAACATTATTACTAAGGAAACACAGATTCTATAAACTTTCAGAACCTAACCTATTAATAATTTGGGACTTGGTGACATTATTGAAGAGTCTTTGAATCCTAGAATGATAACCAATGTGGAATCAAATACTTTGGATTAAAGTCTTTGCTTTGTTCATGAGTTTGGGGCCAGTTTGTATCCCTGGCCTTTTACCTTTCATCCCTACTTGCCAATCAAAGTGAACTTTTCTTACCCAGAGTACCCTGGCATTTTTTTTTTGAGATTTATGAGAGTTTAGTTAGTTTATAAGATTTATGAACAGTGGTCTTACAGGGTCATTGAAGAGGATCCCAGATCATGCGAGTCCCCAGATTCAGTGTTTTGGGCTCCTCTCTCAGGTCTCCAGGGCCTGGACCTTGTTTCATTGCTGATAGGAGGTGAATCTTGGACCAGGCCCCTGAGATTCCATGTAACAAGACTCTGTTGCCTTTATTTGTGCTGTAAACATACATGATACGGCTTCTGGTGGGGAGAATAGTGAGGAGGATAATCAAAGTTATTATATTGTCTTTGAAAGTTATAAATTCTTCTTTAAACAACATATTTTATTATTAGTCAATATATTTTATCTGGGTCAATGCGGAGATAAAGTCACTTTTTCTGTACACAGGAGTTTGGAGAGCCAGGGAAGGAAGTGAAGGATTAGTGAATATTCCATAAGAAATTGACAATTGAGGACTGACTCTTTCAAAGGGGATTTGGAACAAGGTCATAGATTTTCTAAGGGATTGCTGTATTTCATGCCCCTCCTTTTTTTTTTTTTTTTTTTGAGAATTTTCATTCAAGAATAATAAGAAATGTGGTTGTTGTGATTCAGTTTGATCTGTTTTGCCCTAATGACTACAGTTAACTTAAAATACAAAAATAAAACCTTGCTTTTTCCCTTTAG
Seq C2 exon
CCAACACGGGATGACCGAGGGTGGATTATTAGTCCCATTGGCCCCAATCCTTGGTGGACTGTGATTGCTGCAGTTATCCCAGCACTGCTCTGCACTATCTTAATATTCATGGACCAGCAGATCACAGCCGTCATCATTAACAGGAAGGAACACAAACTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017950:ENSBTAT00000023868:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(11.4=100)
A:
NA
C2:
PF0095516=HCO3_cotransp=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]