HsaINT0153508 @ hg38
Intron Retention
Gene
ENSG00000050438 | SLC4A8
Description
solute carrier family 4 member 8 [Source:HGNC Symbol;Acc:HGNC:11034]
Coordinates
chr12:51485787-51488860:+
Coord C1 exon
chr12:51485787-51485900
Coord A exon
chr12:51485901-51488698
Coord C2 exon
chr12:51488699-51488860
Length
2798 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
3' ss Seq
TAATATATTTTCCCCCTTAGCCA
3' ss Score
6.54
Exon sequences
Seq C1 exon
GTACGCTCCATGGTGAGTGACTTTGCTGTTTTCCTCACTATCTTCACAATGGTGATTATTGATTTTTTGATTGGAGTCCCATCACCAAAGCTTCAAGTTCCCAGTGTGTTCAAG
Seq A exon
GTAAACAGATCTCAGAGTACTTGGTGCACTCATGTAATTTCATACATTCTGATGCCAAGTAAATTTCAAAGGCCTTTTCATATCCTAATCCTGAGTTTTACAGTCCCCTAAATCTGAACCTTGCTCCTCATACCTTGTCATGTAGAAAAGCAAACTTCAGACTTGGTTGAATTCAAGACAGAAAAGCCAGAGAACAGAAAAACCAAGGTTGTTTAATGAATGAAAAGTATTATTATTATTGTTATTAATACCACTTACTGTTCTTAATATGTTAATATTTAAACAATGGAATGTGCACATTTACATAAATATATTCAAGACACTGTGGAAACATGGGTCTCTGGAACAAGCCTCGTTAACAGCACTTTCATTGAGCATCAGCTGTATAAGGGCACTGGGAAGAATGAAAAAGGTAAAGGACTTGGCCTGAACCTTCAAGGATGGTGCCCCTTCCTTGAAGGGGGAGAATGGAACTGAGAGGAGCCTCATCAGGAGTCTAGGGCCCCTGCCGGAGTAATCATGACATCTCTTTCGAAATCATCTCAATCTGATTTCATTGTTTGTATAACTCTCTCTAATATATGGTATTTTTCAAGAAACTATACAAAAAGTCAAACAAATGATCAATACATGGGGACTCCAAATAGATTTCAGTTTGGGAGCACTGACTAAGTAGACAAAGAAGATAGAAAAGCTGAGCTCAGTTCTATAGAGCCCCATAGGGTGAGGGGAGAGAAAATCTGTGCGTACTCAGTGACTTTAGAAGAATTATGAAGGAGGAAAGTGGGAGAAGTTGGTGAGGAGAAGGCCGACAGGAATAAAGGCAGTCCCTGACTTGCAAATGCTCCCTTCAGTTGTCCCTTTCCTTTCTCTTTTTTCTCTCTACCCATGAAGTAGGCCTGTTGAAATACCTTCTTCCATATTGTCTGAAAATTTTTAATTTTGTTGAATTTGCTGAAATGCCACCAGTTGGAAGTTTATGGACTAACCAATCCCTCTTGTAAGTATAATACCTTCTAGAATATGGCATTCTTGCCTTTGTGTGAATGAGCACAATCAGCTTTCTCTCTAATACCTAGCTGAGATCAGTGCTGCAGGAGGAATGGATTTTGTCTAAAAATAGGTAATATGGGAACATTAAGCGGTCCTTGGAAAGGTTCCAAAGGGATAGGCCTAAGATAGTCAGAAGGCACTGAATTTCTGGGACATCTGTGAAGAACGCCTCTGGGAGGTAGGACAGGGGAGAAAGGGAAACGGGAGAATGTCAAAGAAAATGTTGCTCATGACAGGCTCCATTTTCAGGAGGCAGAGAAGAAGTTTTCTTCTTTTTGTCTCTCCCTATTGTATCACATGGCACTCAACTCCCAAGACCCAATCTGAAGGCTAGTACTATTACTAGGGGTATCACGTCATTAAGGGTTTATTTAATAAGTTTTTGTGTTGGTCTGAGAACTTAACTACCACTTAGAACATTGTTGTTAGGGAAACATAGATTCTGTAAACTTTTAGAAGCTAACCCATTCATAATTTTGGACTTGGTGGTGTTATTAAAGAGTATTTGAATCCTAGAGTCATGACTAATAAGGAACCAAATCAAATATAACAGTCTGTGCTTTGTTTCTTGAATTTGGGTCAACTCTGGTCCAGTTGGTATCCCTGGCCTTTTATCCTCTAGCACCACTTGCCAAAAAAGGGCGAACTTGTCTTCCTCAGAGTACACTGCAGGGGTGGGGTAAGGATCTAGGTGAGTTTAGATATGTTGTGAACACCCCAGTAAGATTTATAAACAGTTGTATTACAGGGGCATTGGAGAGGATCCTAGGTCAAACAAACCCCCAACTTTAGCCGTCTTAGGCTCCTTCTCAAGTCTCTGATGGCTGGACCCCTGTTTCACTATTGATGGGAGAAGCCCCTTGGAGCAATCCAGTCCATTCAAAGCCCAAGAGATTCCATGCAGATGGCTCCACTTTGCCTTTATTTATGCTGTAGACACACATTATGTGGCTCTGGAGAGAAGTCGTAGGAGAATAGTCTAAGTTATTTATATTTGTCTTTAGAAGTCATTAAATTTTTTTGACAACAGATACAGTTGTTAATTATATTTTACTTGGGTTAATGTTGAGATACACTTGTTTTCTCTCTACACAGAGGTTTGGAAAGTAAGTGGAAGGAAGTGCAAGATTAATGAATATTTCACAAGAAATTAATAATTGAAGATTGACTGTTTCAAAGGGGATTCGGAACTATTACTGAGCAAAAGGGGCTTGCTGCCCAATGTGCTAGAAGCCAATACTATGATACCAGGTTTTTGAGAGAAGAAAAGTTTTTTATTTCAAGTTTACTAACAAGGAGACAGGAATTCAGCTCAAATCTGTCTCCCTGCACTGGCTTTACTGCAATAATTAGAAAATGTTTAGGGGGTGGATTCTGGGATAGTAGGTTATTGGTAGAAGGAAAGGGGAGGTCTGGAAAGTCCTCAGGCATTCATAGTTATCTCTTCATGCTACCTCTGGGTCCCCTGTGCCAAGGGGGTTTCAGCAAGTTGTTTCTTTTCTTATCTACCATCCTGCAAACCCAAGAATTTCTGTTAGTCATTGGTGTCTTTAACTCTTTGGGAAATGGTTTCAGAACAAGGTCATAGATTTCCTAAGGAGTTGCTGTATTTCATGCCTTTTTTTTTTTTTTTTAAGAACCTCACTCAAGAATAAAAAGAAATATGGATATTGTGATCCAGTTTGATATGTTTTACCCCAATGACTATAACTTAAAATACAAAAATAATATATTTTCCCCCTTAG
Seq C2 exon
CCAACAAGGGATGATCGCGGATGGATTATTAATCCCATTGGCCCCAATCCCTGGTGGACTGTGATAGCTGCAATTATCCCAGCTCTTCTCTGTACTATCTTGATATTCATGGATCAGCAGATCACAGCCGTCATTATTAACAGGAAGGAACATAAGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000050438:ENST00000453097:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(11.6=100)
A:
NA
C2:
PF0095516=HCO3_cotransp=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains