BtaINT0136178 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017950 | SLC4A8
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 8 [Source:HGNC Symbol;Acc:HGNC:11034]
Coordinates
chr5:28477510-28480553:-
Coord C1 exon
chr5:28480302-28480553
Coord A exon
chr5:28477579-28480301
Coord C2 exon
chr5:28477510-28477578
Length
2723 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
CTCTGCCCTTTCATTTTCAGTTT
3' ss Score
12
Exon sequences
Seq C1 exon
AAAGGATGTGGCTACCACCTGGACCTGCTGATGGTGGCCATCATGCTGGGTGTCTGCTCCATCATGGGCCTGCCCTGGTTTGTGGCTGCAACTGTCCTATCCATCACACACGTGAATAGCCTCAAACTGGAATCTGAGTGCTCTGCCCCAGGAGAACAGCCCAAATTCTTGGGCATCCGAGAACAGAGAGTGACAGGCCTTATGATCTTTGTGTTGATGGGCTGCTCAGTCTTCATGACAGCTATATTAAAG
Seq A exon
GTAAAACCATTCATTCGTTCATTAGGTAAATATTAAGTGCCTCATTTGTGCTGGGAATGCAGTGGTACAATAAACAGATACACATACAAATACCTGCCCTGGGGTATTTATTCTAAGTGGAGCAAGACAGATAAGATGTAGTTAAGGAAGTTAGTTAAGAAAATAAACAGGGTAGTTACAGAATGTAATATGTGATCAAAGGAAATATAGTGTTGTATGGTTCTATAGAGAAGTAAAGGGATGTGTTTTGTTAGTGTGGTCAGAGAAGGCCTCTCTAAGGAAATGGTGTTTAAGATGAGATGGAGCCAGCCCTGCCATGCGTGGTGGGAGAGGACATGGGGGGAAGGGAGAAAAGCAGTCTAGACAAGTCCTGAAGTGGGAAATAATGATACATGTTCTAGGAGCTACCAGGGCCGTGTGGCTCAGGGATGTTAAAGCAAAAGCACTGTGAGATGAGATTGAAGAGCGCAAGGGCAGATCATGTAGGGCTTGTTGACACTGGTAAAGGTAACCTTCAGAGAGTTTTAACAGTAGAGGGACATTATCCATTTAATATTTTTTAAAAAGATCTCTCTGGCTCATATCTAGAGAATAAGTATTTAAGGTTGAGGAAAAATAGAGGTAGAAGACTGTGAGTCTGTTTAATAGACTGAGTCTATTACAGGTGAGAGAGGATGGTGGTTGTATAGGGAAGTTGGTAGTAAGGAATGCATAAAAGGCATGACTTCTGTATATCTTGGAGGAGATCAGGTCTTGCTGGTTGATTGGATATGGAATGGGAAAATGGAAACATCAAAATGACTGCTAGGTTTTTGGCTTGACCATCTGGGTGCAAATTGATGGCATTTAAGGTGGAGAAGGCTGTATGAAGGAGGAAGTGATTTTGTAAGGGATGGGCTGTGATCAGATTTGAGTGAGATGTCTGGTAGGCATCTGAGTGAAGAGGCTGGGTAGGGGTTACTAGACTAAAAATATAAATGTGGGAGTCAGCAGCACATAGGTGGTAGTGAAAGCCAGGGGCATAGATGAGCTCACTCAGGGGGAAGGGTAGCTATAAAAAAGGAGGAGTGGAGAGAAGAGCAGAGTCCATGGAGGTCCAATATTTAGAAGGTGGGTAGAGGAAGAGACAGCAACAGAGACTCAGAGGAGCTGCCAGAGGGGGAGGGGGGGAACCAGGAACATATGATGTCAGGGAATTCAAGCAAGGGGAATGATTGGTTGGAAACTGTCTGGAAAAATGAAGACCAAACCAAGATCATTGGGTTTGGCAACATGGAAGCCTAATGAGACTTGCCAAGAGCAGATTGATTGGAACAATACAGTAGAAGCCTAGTGATGGGGACCTGAAGCGTATATAGGTGGTGAGGAAGTAGAGTGTGGGCAGACAACTCTATCAAGAAGTTTTTTCTATTGAAGTAGAACAGCGAAATGGGCAGTGGCTGGTATGAGACATGGGGTGAAAATAGGATTTTTGGAAAGATAGAAGCTACCTTGAACATGAGGAAAAAAAATTGTTGTGGGTGAAAGGCCTGCCTGTGGGAAAAATAGGATAAAAAAGAAAGTTCAAGCCCCAGCCATTGTGGGGCACTTACTTATCTCCCTTGCCTCCTTCTCCCGCTTTTTAGTGACTCATCAGCCACTTCAGTCTGCAATGCAGATGCTGTTTAAGGGTGCAAATTGGCACAGGTGGGACAGGATTCTGAACCCTCCTCCTGCCTCCTTACCTTCCACTTGATCTTGCCACGTCTTCTCATGCCTCTTCCCCCTTTTACTCTCTGTCCCTGGCACGCCCCCACCTCTGATCTGGGTGCCATCTGGAGGAGCCCAAAGGTGTCTGCTCTTTGGGAGTGTAACCATGAGTCATTGTGGTGGGCATTGCCTGGCCTTCCTAGAACAGTCTCAGGAGGATTCTTTTAGGCAATCATTCAGTAGTTCTTCTAACAAGGTTAGCACCAAATTGAGATGTCTACTCACTCTAGAGCCAGAACAACATAAAATCCAATAGAGATTTTCTAGTTCAAAGAAGAATTATGTTTAGACGTGTTCGTTAGCCCCAGAATAAAAGCAAGTTGAGTGTAGTCTTTGCAGTGACATTTTCCTTGCCTTAATTCCACGGGCCTCATTACCTCGTAAAGCTGCTCTGAAAATTACCTAGATTGGTATAATGTGAGAAGTGTGCGTATGTATTCAAGTGCAATAGAATCATGTTGCCATTTCTCCCTAAATTATTCTTCATCTGACAAGATACCTCCCTACCCCTGCCCTCAAATCTCTGATTAATAAAAAGCAAATGCTTGTAGCCTATATTAAAATACACCAAGTCCCTGAGGAGATGATTATGTGATTACAAAAGATTTAAAAGATTTCAGTTCTGTAAAAGAGATGGGTGAGTGTGTGTGTGTGCGCATATGTGTGTGTGCGTGCCTGCCCAGTTCCCTGGAGGAGGAAGAACCAGATGGGGAGAAGATGTGAGGCCTATGATTTAACCAGGACCGGATTACACTTACATGTAATCATTTCATTTCAGAACAAAATGATTTGTATCATTGTCAGCTTCTGTTTTCGCTTCTGCTTCTTAATCATGTAAAGACAGCAGAAATGAACGCAGCATTTCTGCAGTGATTTTGTGAGTTTGCTTCCTTCTCGGAGGTTTGGCAGTTTATATAATCTTGAGTGTGCTATGATACACATTGAATTTCTGGTCTCTGCCCTTTCATTTTCAG
Seq C2 exon
TTTATCCCGATGCCAGTCCTGTATGGAGTCTTCCTCTACATGGGAGTGTCTTCCCTGCAAGGAATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017950:ENSBTAT00000023868:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(16.1=100)
A:
NA
C2:
PF0095516=HCO3_cotransp=FE(4.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]