GgaINT1025747 @ galGal4
Intron Retention
Gene
ENSGALG00000008423 | SLC4A8
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 8 [Source:HGNC Symbol;Acc:HGNC:11034]
Coordinates
chrLGE22C19W28_E50C23:856695-857769:-
Coord C1 exon
chrLGE22C19W28_E50C23:857518-857769
Coord A exon
chrLGE22C19W28_E50C23:856764-857517
Coord C2 exon
chrLGE22C19W28_E50C23:856695-856763
Length
754 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
GATAGCATTCCCTTTTGCAGTTT
3' ss Score
6.01
Exon sequences
Seq C1 exon
AAGGGATGTGGGTACCACCTGGACCTCTTCATGGTGGCTGTGATGCTCGGGGTGTGCTCAGTGATGGGTCTGCCTTGGTTTGTGGCCGCGACCGTCCTCTCCATCACCCACGTGAACAGCCTCAAACTGGAGTCAGGCTGCTCAGCTCCTGGAGAGCAACCCAGATTTTTGGGGATACGAGAGCAGAGGGTCACGGGACTGATGATCTTTGTGCTCATGGGCTGCTCCGTCTTCTTGACCGCTGTGTTAAAG
Seq A exon
GTAGGAGGAAAACGCAAAGCACCCAACAGCCTGAGGGATTTTTGGAGATTGCACAAAAGTGGTCCCTAGTCCCCTCTCTACAGGTCTGAGGGGCACAGGAGGTGATCGCAAACCTTGAGGTGTGACCCATAATAGCAGCCGGCCCCCACTTAGACTTCCCAACCCTTCAGACCCCAGTTGGGCATACTTGAAGGCACCAAGACACATCATTTTTTTGACCCACCTGTGTTTATGGGGTACAATCTCATGCACTCAGACCACTACATTTGCTCTCTTTCCATCATGCAGCAAGTGGACAGGTTGCAATGTGCTCCCCAGTGCCTCAGCGCTGCCATTCCTGGTGGCTAAACATGCTGCAATCACCTTGTGCACATTCCTCCCACAAAGTAATCTCATCTGCAGGCTGAAGGCAGGCACACCACCTCTGCATGTTGCCACAGAAATATGTAGAGCTGTTTTCCTGCCATCACAGAGTGCAGCATATGGTAGCATGGGTGAAATCACCTATTTTCCTGCAATCTTTTTGGAAAATTGGATTATTTTGGTGAAAAAAAAAACAACAAACAAAACACTCAAAAGTTCCGCCTAAAGCAGAGCATTTCTCACGGGCATGCAGAAAATATCTAGTGTGTAAAATTTGACACATCTCCAGCCCTGTGGAAACTGGGAGGCTTTGGGCAGCTTTATGCAGAGTGAAAGGATGAGATTGAAAATGCAATGGCTTTACTTAAAATGATAGCATTCCCTTTTGCAG
Seq C2 exon
TTTATACCAATGCCTGTGCTGTACGGCGTCTTTCTCTACATGGGTGTATCGTCGCTCAGAGGAATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008423:ENSGALT00000013720:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(16.1=100)
A:
NA
C2:
PF0095516=HCO3_cotransp=FE(4.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTACCACCTGGACCTCTTCA
R:
CTGAATTCCTCTGAGCGACGA
Band lengths:
311-1065
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]