BtaINT0137026 @ bosTau6
Intron Retention
Gene
ENSBTAG00000043991 | SLIT1
Description
slit homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:11085]
Coordinates
chr26:18180506-18181296:-
Coord C1 exon
chr26:18181133-18181296
Coord A exon
chr26:18180530-18181132
Coord C2 exon
chr26:18180506-18180529
Length
603 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGCC
5' ss Score
7.13
3' ss Seq
GTTTCTCCTTCTCTCCTCAGCCA
3' ss Score
9.38
Exon sequences
Seq C1 exon
GCATCTGGCCCAGAACCCCTTCATCTGTGACTGTAACCTCAAGTGGCTGGCAGACTTCCTGCGCTCCAACCCCATCGAGACCAGTGGGGCCCGCTGTGCCAGCCCCCGACGCCTTGCCAACAAGCGCATCGGCCAGATCAAAAGCAAGAAGTTCCGGTGCTCAG
Seq A exon
GTAGCCGCCCACCCGCCTTCAGTCTGCTCAGGGACCCTGAGGTGTTTCCTGGGTGGTTCCAACAAGGGTGGCTGGACCTCTCTGGACCCGTGCTGGAGGGTGTAGGACCCACACTGTAGACTTGGGTCTTACTGAGGCCGCGGGAGGACTGGCTGCAGATCCCCCAGGGAGGACTGCCAAGAACCTAGGTTGCTCTACTCCCAGGACGGTGCTCTTTCAAGACTTAGGAGACACCCAGGAGGCCTGGGAACTCTCCTCAGAGAGATGGTTGCCTCCTCCAGGCTCTGGGGTGGCAGGGGGTCAGCCTCGAAGCCCAAATGTTATCCATTTACACCTGTGAACACTGCTGTGGTTTTGGTGCTCCCTGGGGGCGGTTTACTTGGGGTGGTACCATCCCCACTCCCATCAGTCTGGGCAAGGAACATCTGTGCTCAGCAGCAAGACCTGCACTCAGGAGCTGGGTGGGTGGGCTCCAGGGCTTTGACTCGCGACCCTAGCCTGGTTCCTGGGCTGGCTTCTGCTGGGCAGCAGGGTGGGGGCCTGGGCTGTTCCTGCATGTCCTGGACAATCCCAACATGGTAGTGTTTCTCCTTCTCTCCTCAG
Seq C2 exon
CCAAAGAGCAGTACTTCATTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000043991:ENSBTAT00000061296:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127992=LRR_4=PD(45.6=46.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGGCCCAGAACCCCTTC
R:
TGGAATGAAGTACTGCTCTTTGG
Band lengths:
185-788
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]