GgaINT0041606 @ galGal3
Intron Retention
Gene
ENSGALG00000007622 | Q8QGG9_CHICK
Description
NA
Coordinates
chr6:23833196-23833470:+
Coord C1 exon
chr6:23833196-23833359
Coord A exon
chr6:23833360-23833446
Coord C2 exon
chr6:23833447-23833470
Length
87 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGC
5' ss Score
8.19
3' ss Seq
TGTGCTTTTTCTTTCCGCAGCCA
3' ss Score
11.33
Exon sequences
Seq C1 exon
GCACCTGGCCCAGAACCCCTTTGTCTGTGACTGCAACCTGAAGTGGTTGGCGGATTTCCTTCGTGCCAACCCCATTGAGACCAGCGGTGCCCGCTGTGCCAGCCCCCGGCGCCTGGCCAACAAGCGCATTGGGCAGATCAAGAGCAAGAAGTTCCGCTGCTCGG
Seq A exon
GTGAGCACCACCCTTGTCACCTCCAGGGGCTGTGGCCAAATCTCTGCTGTGCATACAGTGGTGCTGATGTGCTTTTTCTTTCCGCAG
Seq C2 exon
CCAAAGAGCAGTATTTCATCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007622:ENSGALT00000012327:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127992=LRR_4=PD(37.5=32.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGAACCCCTTTGTCTGTG
R:
TGGGATGAAATACTGCTCTTTGG
Band lengths:
179-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]