BtaINT0137100 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017746 | SLIT3
Description
slit homolog 3 protein precursor [Source:RefSeq peptide;Acc:NP_001178379]
Coordinates
chr20:396583-397526:-
Coord C1 exon
chr20:397455-397526
Coord A exon
chr20:396655-397454
Coord C2 exon
chr20:396583-396654
Length
800 bp
Sequences
Splice sites
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
3' ss Seq
CTGTGTGTCCTTTTCCACAGGAT
3' ss Score
12.73
Exon sequences
Seq C1 exon
TGACCTGAGCAACAACAGCATCGGCATGCTGACCAACTACACCTTCAGCAACATGTCTCACCTCTCTACCCT
Seq A exon
GTGAGTACAGAGACCTACTGTGTTTAACATGGGCTTGGCACAAAGTGTGTTCTTCCCGTGTCCCTCAGGCTTATGTGCTCTGCTCCAGTGACCCTCAGGACGGTGGCTGACCCAGCACAGGGCAGACCTTCATCATCAGAAGGGAAGTAACACAGGTCATAACTGTGGGCAGGTAGAAAGGGGTTGGCCCCTAATTGCTTCTGAAGTTCATATCTGCAATACCTTCTGTGATTTGTGAATTTTCCCTACTCAATTATATTTTGCTCAGACCCATTTGGACTTCCCTCATGGCTCAGACAGTAAAGCGTCTGCCTACAATGTGGGAGACCTGGGTTCAATCCCTGGGTCGGGAAGATCTCCTAGAGAAGGAAATGGCAACCCACTCCAGTATTCTTGCCTGGAAAATCCCATGGACGGAGGAGCCTGGTAGGCCACAGTCCACGGGGTCGCAAAGAGTCAGACACGATTAAGCAACTTCACTTTCAGACCCATTTATTGCCCATTAGCTCTGTGCACTGTGAGCACTCACCATTTGACAATAGAGGGAGATGACAGCAAAGTTGGCCAGGGAGCCAGCCTGCTAAGGAGCCTCTGAGGAAATGGGGAGATGAAACCATGAGCTTCCTGGAGTGGCAGGGGATGTTTCTCTTCCCTTATCCTCAGGGTGCTTTCTGCCAGTTTATTACATTGGAGAAGGTAAAGAAACTGTTTGCTTTGGCTGGTGCACAGTGTGGACTCATGCATGCGCCAATAGCTGAGACTAGGAGGGACCAACAGAGCCTGTGTGTCCTTTTCCACAG
Seq C2 exon
GATCCTGAGCTACAACCGGCTGCGGTGCATCCCCGTCCACTCCTTCAACGGGCTGCGGTCCCTCCGAGTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017746:ENSBTAT00000049620:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127992=LRR_4=PD(44.9=88.0),PF138551=LRR_8=PU(8.6=20.0)
A:
NA
C2:
PF138551=LRR_8=FE(41.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]