MmuINT0148350 @ mm10
Intron Retention
Gene
ENSMUSG00000056427 | Slit3
Description
slit homolog 3 (Drosophila) [Source:MGI Symbol;Acc:MGI:1315202]
Coordinates
chr11:35651100-35651819:+
Coord C1 exon
chr11:35651100-35651171
Coord A exon
chr11:35651172-35651747
Coord C2 exon
chr11:35651748-35651819
Length
576 bp
Sequences
Splice sites
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
3' ss Seq
CACATTTCTCCTTTCCACAGGAT
3' ss Score
11.66
Exon sequences
Seq C1 exon
TGACCTGAGCAACAACAGCATCAGCATGCTGACCAATCACACCTTCAGCAACATGTCCCACCTCTCCACGCT
Seq A exon
GTGAGTATGAAGACATTTCATCTTTAACCTCTGCGGGCATGGCAATCTAGTCTTGGAGCCCCAGTCCTAGGTACCTTGTTCCAGTGGTCCTCATGGCTTTGGCTGTCCCTCTGAAAGGCAGACCTTAGTCATCAGAAGATGCCAGTTGGAGAGGTAGGGGTCTGGCAGATGGAGGAACGAGAAGCTAATTACCTCTGAAGAAGGCTGTCTTTGGAATGCCTTCTGGGATCCGTGCGTGTTCTTTCCCAGTGGAGGGTTTCCTACACAATTATATTTTGCTCAGACCCATTTATTTCCCATTAGCTCCGCACGTTGTAAGCACACACCATTTGACAGTGGAGGGAGGTGGTAGGAAAGCTGATTAGAGAGCCAGTCTGCTGTGGAACGTGGGGGTGGGGGAGGAGGCAAGTTTAGGAGCTTCATGGAGTAGCAGGAGGTTTCTCTTCTCTCTGTATTGCGGTACCTTTGTCGATATATTAAGTCAGAGAAGTTGAAGGAAACATTTGCGTTGACGGGTCCACTGTGGAAGAACAAGAACAGGGGCAGTCATCAGCCTCACATTTCTCCTTTCCACAG
Seq C2 exon
GATCCTGAGCTACAACCGGCTGAGATGCATCCCTGTCCATGCCTTCAACGGGCTAAGATCCCTCCGAGTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056427:ENSMUST00000069837:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127992=LRR_4=PD(30.8=48.0),PF138551=LRR_8=PU(8.2=20.0)
A:
NA
C2:
PF138551=LRR_8=FE(39.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types