BtaINT0141180 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008676 | SRRM4
Description
serine/arginine repetitive matrix 4 [Source:HGNC Symbol;Acc:HGNC:29389]
Coordinates
chr17:58444933-58448263:-
Coord C1 exon
chr17:58447959-58448263
Coord A exon
chr17:58445137-58447958
Coord C2 exon
chr17:58444933-58445136
Length
2822 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
3' ss Seq
AGTGGTTCTCTCCCATGCAGAGG
3' ss Score
8
Exon sequences
Seq C1 exon
ATCACTGGGTCGGGGTCTGCTGCTGACCTCTTTACCAAAACAGCCAGCCCGCTCACCACCTCCCGAGGACGCTCCCAGGAGTATGACTCAGGCAATGACACCTCCTCGCCACCCTCCATGCAAATCAGCTCAACCAGGTCTCGGGGTCAAGAGAAGGGGAGCCCCAGTGGGGGCCTAAGCAAGAGCCGGGACCCCAACAGTGGAAACACCTCTGATTCAGGGAACTCTTTCACCACTTCCTCACCCCAGAACAAGGGGGCCACTTTGGAGAACCTCTCCCCCACCAGCAGGGGCAGAGAATCAAG
Seq A exon
GTCAGTGCACCTGGATGGGAGGAGGGGTTCTGACTGAGCTCCACCATCTCAGTCTCTCACCCTGGCACTGCACACACACACACACACACACACACACACACACACAGGAAGCCAGGAGACTTTTATTTGTAAAAGAGAGAGAAATTAGCATAATTTGGGGGCTGGGAATCAAGGAGATCAGCTTCAGGTATAGCTGGATACAGGGTCTCAAAAATGTGTCATTGAGAAGTTGCCTTTCCCATTACTTCTCTCAGCTCTGCTTCCCGCCTCTTGGCTTTTTTCTCAAGCAGATCATCCTAAAGCATTGGCAAGTATGCCATCCAGTTAACATCCTGTCAATCTAGCCAGCCAATGGAAGGGAAATGCCTCTTTTCCCAAAATTTCAGCAAACTATCAAGGCAAATGCTCACTGGCTCTGCTTAGTCTACCTTGTTCACCCAAGACCAAACACACTGCCCAGAGGATGCTATGTTCTTGGCTAGAATTTGTCACATGCCACCATCAGAGCTAATGAATCTTCCTGTGTACACTAAAATTGAAGAAAGTCTGGTTCTCTGAAGGGAAAGCAGGGTACTGTTAATCAGGAGGAGGAATGGAAGTTGGGCAGGAAAAAAAAGATGTCAATTTTATCAATAATTCCAGGAGAAAGTCTTAACATTAAGTCACTATCATTTAAAAATATGCCACAGTATTTACTTTAAAGCTATTATGCAGGAAATACTGAGAATAGCAATAACAAGAACAGTAACAGAAACTATTATTGATGGAGCCCTGACTAAATGCTAGGCGTCATGCCAGGTGCTTTCCACAGATAATCTTCCTTACCTCCTGCTACAACCTTTATGGGATAGGTACTATTATAACTTTCTTTTAGCTAATGGGGAAACTGAAGCTCAGAATAGTTAAGAAACTCAGTTAATAAGGGCTGGTACCAGGACTAAAAACAGATTTGTGTCTCCAGAACTGGAGTTAAGCCTGAACAGCATCTAGCAGGTACCTGCTTAATCTGATATACATGGACAGCAGGATTAAATAATTTAGACCCAACTGTGAAATATAAATGATCTTTAAATCATGGCTGTTTATGTCATGTCAGCTATGAGCAGAGGCAGAGTGGAAGAGACATCAGTTCTAAATCAGGGGAACCGTAGACAGTAAAAGCGGGGGTTGGCAAGGGAGCAGGGACATGGGCTTCAGAGCTGGACAGATCAGTATTTGAGACTCTGGGTGGCCTTGAGCAAGCAACTTGCCCTTCTGAGTCTTCTCTGTAAATAAGAGGTAATAATAGTACCAACTTCCTAAAGTTGTTGGGGGAATAAATGAGATGATGCTTGTGAAGCACCCAGGATGCTAACAGGCTCAGCATGTTTATTCCACAGCTGTTTATTGATGACCTAGGACTTATGTCTCAGGCTCTGTCCTAGGTGCTGAGATACAGTGTCCAGAGAGACATGAGTTCTGTCTCCAGAAAGCTTGGTGTCTGGTGGAAGGAGATAACAATTATAAGACCAAGCAAGCCATCTAGGGGTGGGGAAGCATTGGGGCTGGAGGTTGTGATAACACATTAGAGGTAGAGGTGACATAAGCAAACCGAAGGGAGTCAAAAGCCTGAAACCATGAGTCAGTTCAGTTCAGTTCAGTTCAGTCGCTCAGTCGTGTCCGACTCTTTGCGACCCCATGAATCGCAGCAGGCCAGGCCTCCCTGTCCATCACCAACTCCCACAGTTCACTCAGACTCACTTCCATCAAGTCAGTGATGCCATCCAGCCACCTCATCCTCTGTCGTCCCCTTCTTCTCCTGCATCAGAGTCTTTTCCATTGAGTCAACTCTTCACATGAGGTGGCCAAAGTACTGGAGTTTCAGCTTTAGCATCATTCCTTCCAAAGAAATCCCATGTTCTAAGGCATGCAGACAAGGAAGGGAACAGGACTATTCCAGGAGAAACAAGTAATCCATTACGGCTGCAGTCAAGAAAGGAAAGTGCCAGAGCTGAGACTGGAGGGTGAGCAGGGGCTGGGTCATGATAAAACCATATTAATGTGATTTGAACTTGACCCTTGGCCCAATCCAAATGAACATGTCCTTACTAAGAACCAACAGGAATCCAGCATGGCTCTAGGCAAGGTAAGGATATGACAGGACCCTGTCCTTTGTGTGAGTTTGAACAAGCCTCTACCCTTCTTTAGGTCTCCATTCCCCCATCCACAAAATGGGCTATACCAGTTTCCCAAACTTAAATCAGCCAGTTTTTGAGTTGTTCCATATCCAGATACTTCTGTTACTTTTATTTACCTTAATAAACTCACTTTTTACTACAAGGAAGCTTATAGTACTATCTTAAATAGAACATTTTTATCTCTTGTCCTAATAGAAGGTACCTGTGAAAATACATAGGATTAAAACAAAGTATTTAATTTTAGTTACAGTTGCCTACCCAAGGTTCTGAGTCTCAGGCCTGCTGTCTCTCTTTGCAAGTGTTAAAAGAGACAGCAAAAGCCCACTAGTACCCAACCCGGGCTTTCTCATTAATATAATCAGAGGGACTGAAAAAGACAGGACAGAAACTAAATCTTGCACCGTGGGATTTGATCACACCCACCCTGCCCCCTCCCCTTTGGTGTGTTTTCCACTCTATCTCTACTCCTCTAACATCTGTGGTCTGGGAAATCTTTCCAGAGGTAGTAGAGGAGGAAAGGTGGGGGTGGGGGGGCGGGCTGCAAGCGCACCACAGCCAAGGCAAAGGTAGGCAGGTGAGTACCAGCTCAAGATGCCCCCAGACCAGTGGGCAGGCCAGTGCTAACAGTGGTTCTCTCCCATGCAG
Seq C2 exon
AGGATTTCAGTCACCATGTCTGGAATGCACCGAGGTGAAGAAGTCCGATTTGGTTCCATCCACAGCCCGGAGCTCCCCCATGAGAGGGTGCTCCCGAAGCTCCTCCTACGCCAGCACACGCTCCTCCAGCCACTCCTCCCGATCCCCAAACCCCAGAGCCTCCCCCAGGTACACCAGGAGCCGATCCACCTCCTCTGGGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008676:ENSBTAT00000011438:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.927 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development