MmuINT0152618 @ mm10
Intron Retention
Gene
ENSMUSG00000063919 | Srrm4
Description
serine/arginine repetitive matrix 4 [Source:MGI Symbol;Acc:MGI:1916205]
Coordinates
chr5:116449424-116453713:-
Coord C1 exon
chr5:116453409-116453713
Coord A exon
chr5:116449628-116453408
Coord C2 exon
chr5:116449424-116449627
Length
3781 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
3' ss Seq
AGATGTTTTTCCTCCTGCAGAGG
3' ss Score
8.78
Exon sequences
Seq C1 exon
ATCACTGGGTCGGGGTCCGCGGCTGACCTCTTTAGCAAATCGGCCAGCCCTCTCGCCGCCACCCGAGGGCGCTCGCAGGAGTACGACTCGGGCAATGACACGTCCTCGCCGCCCTCCACGCAAACCAGCTCGGCCAGGTCTCGGGGCCAGGAGAAGGGGAGTCCCGGTGGGGATCTAAGCAAGAGTCGAGACCTCAACTGTGGCAACACCTCCGATTCAGGGAACTCCTTCACCACCTCCTCCCCCCAGAACAAGGGGGCTGTCTTGGAGACTGTCTCTCCCGCCTGCAGGAGCAGAGAGTCAAG
Seq A exon
GTCAGTGTATTTGGGGGTGGGCGGGTCCGCCTCTTAGCAGCAACATTTCACTGTCTCATCATGGTTCCAGTCTTCCTTCCAGGAGTCTTTATTTACAAGAGAGTCCATTCAAATTAGCATATATATGATACATATGTATATGCAATATATGCAAATGCGCACACACACACACACACATATACATTAACTTCTTTTGAGTCACTGTCAGTTAAAAACGTATCATAATACTGACCACAATAAATTAAAAGCATTCACACTAAAAAAAAAAAAACAAACCTGCATATATATGATTATAATAGTTTTATTCTTTTTTAAAAGAATTTATTTATTTTTATTTTATATGCATCGGGGTTTTGCTTACATGTATCTGAGAGAGGGTATTGAATACCCTGGAACTGGACTCACAGACAGTTGTGAACTGTCCTGTGGGTGCTGGGAATTGAACTCAGGCCCTCCAGAAGAGCAGCCAGTGCTCTCAACCACCAAACCATCCCTCTAGCCCCACAGATTGAAGAATATTATTTGGCTCTTTAAAAAAAAAAAAAAATATATATATATATATATATATATATATATATATATATATATATATATATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTATACAAAAGAAACATTTCATCATCAACACACACACATACACATGACCTTCTTTGCTGGGTGTTGTGCTTGCTGCTTGCATTTTCCCTTCAGAGAAGACAGATTCATGTTTGCTCAGAAGCTGTCTTAGTCAGGGTTTCTATTCCTGCACAAACATCACGATCAAGAAACAAGTTGGGGAGGAAAGGGTTTATTCAGCTTACACTTCCATACTGCGTTCATCACCAAAGGATGTCAGGACTAGAACTCAAGTAGGTCAGGAAGCAGGAGCTGATGCAGAGGCCATGGGGGGATGCTGCTTATTGGCTTGTTTCCCCTGGCTTGCTCAGCTTGCTCTCTTACAGAACCTGAGACCACCAGCCCAGGGATGACACCACCCAGAATGGGCCCTTCTACCCTTGATCACTAATTGAGAAAATGCCCCACAGCTGGATCTCATGGAGGCACTTCCCCAACTGAAGCTCCTTTCTCTGTGATAACTCCAGCCTGTGTCAAGTTGACACACAAAATCAGCCAATGACAGGGCCATCATTTCTTCACCAACGGCTCTGTTGATCAAGCAATTGAAGTATATGGACATAGTTCCATGGTTAAAATGCTCGCCAAGCAAGCAGTAGAAATGTCAGGTGGGCTCAAAGGCCTGGATCCTCAGGATGCAGAGCCAAGGGTTCCCCAGAGCAAGCAGCGTAGTGAGGGTAGGCTTATCAGTAAGCTCTGGGTTTGACTGGGAGACCCTGCCTCAAAGAAGAAAGAGGGGGAGTGATGGAGAATGATCTCTGGCATCAGCTAGCACACCTGCCCCCCCATATCTGTGCACATGTGTGCACATACTACACACATGCACAGATACATGAAGAGAATGTGGAAGAAAAAATAAGTGAATCACAGCATAATGCTAAGCACTAAATGTGCTCTCACGGGAGTAATTGTTTAAATTTGCTGGTCATTTAGTCTGCACCATCCATTCAACTTGTTACCTTAGGGCAACACTTAGCTTGGTAAAAATGGCGGGCCCCCGCCTCGAGTTGGCAGATACCCAAGTGGGGAAAGCTGGCTAGCACACTGTACCCAGAGAAGCACTGGGGCTCTCCTCCTGCTGCGGCTTCAAGTCTACCTTTGTGCTAAGTGGTCAAGACTTCCAAATGATGGCCACACCCTACTCAAGTGATAATGATGATGATGATAGCAATGGTATTAGTATCAATTAATTTAAAAGTTGTTAACATCTATTAAGCCAGATAACATACTAGACACTGTTAAAAATGCTTCCCGTGAACAGCTTTCCTCGGCTCCTATTAGTGTCTCCACTTTATATTTATATCACTATTATAACCTTTTTGTGAAGTGCAGTGAATTTGAGGCACAGACCCACAGACTTAAATTCAGCTAATAAGCAACAGTAGCAGCATTCAAATGCAGACCCAACTAGATTCCAAGTCCAAGAGATATATAGCCATTACCTGCTTAATTTGATATACATAGACAGCCCAATTAAATAATTTAGAAGCAGCCTTTCACTGAGGAATGTAAATGATGGTGAAATCATGAGTATTTATGCCCTGCCAGCTCTGGACAAAGGGCTCAATAAATACGGGCTAAGTGGAAGAGATATGAGCTGGAAGCCAAGGACACCACAGACATGGAGGGAAAGGGACTGGAGTGATGACGGACATGTGGGGGAGCCGCCAGACAGATCGGAGTTTGGAACTCTGAGTGACCTTGAGCGAGTCACTAGTCCTTCTGAGTCACCTCAGTAAATCGGCCATACAAGGAGGGCCAGATAGGCAGCTATCGAGAGGATTAAACAAAATGATGCTTGTGAAGAGCCCGAGACATAGAGGGTGACTTTAAAGTGACACTTGACAATCTGTGTCTGGAGGGTGTTACAGAGGGGCACATGCCCTTTCTCCAAGGAGCTCAATATCTGCAGCAAAGATACATGGCGTTATCTGACCGGAGAGTCATGTAGGAAGGGGAGCAGGGCTATGCAGGGGGAACCATGGCAACACACAGGAGACCCTCAACCCCGACCAGCAGTAGAGAGAATGTCCTAAAAGGCTTTCCAGAGAAGACAGGGTCAGGTCAAACCAGAACCACATGTAGAGGAATGGCTAGGTGACAAGGACAGTGCCAACACCTCCTAAGGTCTGGAGACAAGGGACAAAAGAGGACATTTTGTTTAAGAGGGAACAGCCAGTTAGGGTCAAGAGCCAAGACAAGAGGTGAACAGAGGTCATCACGAATCTAGAAAGTTTTATCAATGTGATCTGAAGTTGACTCGTGAACTTGACTCTTGGTCATCTTGAAATGAACATGCCTGCCTGAGAACCTCAGAAGGAGTTTGGTTAGACAAGAGAGACTGTAAGGCAAAGCACCCCTACCCCTTGTCTGATTATGAACAAGCCTCCATCTATCTGTTTTGGGGGAGTGTCTCTCAATCTCTCCATCTGCAAAATGGGCTACATCCAAGTTGCCCAAACTTAACCTAATCATGGGTCACTTTCTTGATTTCTTTTAAAACTATATCCACACTGGTTTGTTTATTATAATCGTAGCATGCCTTTTCTGTATTGAAATGTGCATCAGTTTCTGAAACACAAAAGCTCCTAAATAGAACGCACCTCTGATAATACGATTAAGTCTTTAACTCTGTCTTCAACTCTGGTCAATTCTGCTCAAGGCCCTGACCCCAGAGCCTGTCCCTTTATCTTGGAGAGATTACAAAGTGTTAGAGAGGTGCTGAAAACCCAGGAGCACCCAGCCAGGGCTTCCTCATTCATGCAAGTAGAAGGACTGGACAAGGACAAGGGGGGGGGGGGGGTGTCGGGAATCTCTCACCACAAGATTTGATGTTATTTAATTAACACTGTGCCCATGAGGGCTTCCTGGGGTGCTCTGAAGCGGCCCCTGTGGCGTTGTATGGGTCTTTTACCTGAGGAGACTGAATTGGACTAAATATCCATCTACTTGTGAGGTCTTCTCTATCTCTGCTCTTCTAAATTCTGACACCTGGCAGGTCGTCCCTGAAAAGAGGGAGGGTGGAATGAGGACTGGAGGTCACTGTGGCCTGGGCAGATGTGGAGGAGGGAGCATCAGGTCAAGGTGCCTCCCAGAGTAAGGGTGGCAGGGTGATGACAGATGTTTTTCCTCCTGCAG
Seq C2 exon
AGGGTTTCAGTCCCCATGTCTCCAGTGTGCAGAGGTGAAGAAGTCTAGTTTGGTCCCATCCACAGCCCGGAGCTCCCCCATCAAAGAGTGCTCCCGTAGCTCCTCCTACACCAGCACTCGATCCTCCAGTCCCTCATCCAGGTCCCCAAACCCCAGAGCTTCCCCCAGGTACACCCGGAGTCGGTCCACCTCCTCTGAAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063919:ENSMUST00000076124:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.980 A=NA C2=0.855
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types