MmuEX1024860 @ mm10
Exon Skipping
Gene
ENSMUSG00000086219 | Srrm4os
Description
serine/arginine repetitive matrix 4, opposite strand [Source:MGI Symbol;Acc:MGI:1924048]
Coordinates
chr5:116439369-116461803:+
Coord C1 exon
chr5:116439369-116439436
Coord A exon
chr5:116455742-116455874
Coord C2 exon
chr5:116461724-116461803
Length
133 bp
Sequences
Splice sites
3' ss Seq
CTTCATCTCTTGTTTCACAGATC
3' ss Score
10.43
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
TGCTTTAGATCCTTTTGGACTTAATTTGTATGACAGAAGCCTCTGTTTCTGCGATTCCAATTTGGCTG
Seq A exon
ATCTGCTAGGGAAGGGGCCACCAGAGCTTTTCTAAGAAACCACTTCAACCATGAGGGGAGATGTGTACACCCGGAACTGATAATCACAGAGAGATCCTCAACAGCTTGGAATACCAGGGCCTGGGGTTAGGAG
Seq C2 exon
GAACACAGCAAAAGAATAGACTCAGTGACCTGATGAAGTTCATCTGGAAGTCTGGATGGGCAGAGCCTGAACTTCTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000086219_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTTTGGACTTAATTTGTATGACA
R:
CCTCAGAAGTTCAGGCTCTGC
Band lengths:
139-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types