BtaINT0141315 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003020 | SSC4D
Description
scavenger receptor cysteine rich family, 4 domains [Source:HGNC Symbol;Acc:HGNC:14461]
Coordinates
chr25:34932550-34933274:-
Coord C1 exon
chr25:34933197-34933274
Coord A exon
chr25:34932625-34933196
Coord C2 exon
chr25:34932550-34932624
Length
572 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
3' ss Seq
TAGATGCCTTGTCTCTGCAGCTA
3' ss Score
7.91
Exon sequences
Seq C1 exon
TCCTGGGCCACTCGACTCTCACAGCACTGCCACCGTCAGCCACAAGAGTGGACTGGGCCTGGCACACAGAGCCAGAGG
Seq A exon
GTAAGGAGCCCTGCCCTCCAGGCTGGAATGGTAGAGATGAGGTGGGTAGGACTGGAAATTGGGAAGACTGTCTGGATCCATGGGGAGGGGGCCTGGGCTAGCAGGCCAGGGCTTTTGAACCAGATGGTAAAGACGTGAGTGAGAGAATGGATGAGCAGATGGAGCAAGAATGAAATCCGGAGCTCTGAAAAGTTCAGCAGGGTGGGAGGAGGCACTTCTTCGAAGCTCTGAAATAAAATTTGGCAGGGGCCGGGTGGAATGGGGTGCTGAGATTGGAAATCGAGGAGACTTGTGAAAATTGAGATACACGTTGAATGAAGGATAGAAGTACTTTTGGAATGAGGGCTGGAACTATCGTTGGCACTGAAGTCTGGAAGTAGGATTTGATTCATTTCCTTCAAGCTTCCTGAGGACCCCACCACAGCAGACAACATGGTAACTCTAGAATTGAGGCTGAGTAGGGTGAAGGCGTGGTAGAGGTCGGACATCTCCGTAGGTGAGCCGTGTGCCATGCTGCAGGCCAGAAGTCCCCTTTGTCCCATTCAAACGCTCTAGATGCCTTGTCTCTGCAG
Seq C2 exon
CTACAGGAGTTGGTGCCCTGCCTTCCAGGGAGCCCGCACGGCTCACCACTGCCGCCTGGGCGGCAGGGAAGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003020:ENSBTAT00000003928:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=NA C2=0.346
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]