GgaINT0131335 @ galGal3
Intron Retention
Description
NA
Coordinates
chr19:4191208-4191992:+
Coord C1 exon
chr19:4191208-4191471
Coord A exon
chr19:4191472-4191893
Coord C2 exon
chr19:4191894-4191992
Length
422 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGG
5' ss Score
10.88
3' ss Seq
CCGAGGTCCTCCTGTTGCAGCCC
3' ss Score
6.23
Exon sequences
Seq C1 exon
GATGTGGGCAGTAAGGATGAAGGAGGTCCATCATCTCCATCTCCTTCATCATCTCCATCTCCTCCATCATCTCCATCTCCTTCCTCACACCACTCCACCCTGCATCCTGGGGTCACAGCTGGAGGGTTATGTGCTTTGCAGTTTCTTCCTGCCTGTCACCCCTGTCTTTCTGTGTCCCTGCAGGTCTGGACACATCCACCGTCACATCCTTCACCACCTCCACAGCCCTGGACTATGAAGAGATGCTCACTGCCACAGCCACAG
Seq A exon
GTACGGTGTTGGCAGCAACCAGTGCCACAGCAGGGAGGGCTCTGAGGACCGGCAGCTCCCTGGGCTGTCCCTTCCATGGGGCAGCCATCACGTGGGTCCAGGTGCACCTTGGTGAGGCTCTGGGGCTCTCTTGGGTGACCTTCCCCATGGCAAGTCCCAGGGAACCTCTTCCTCGCCACCGAGGGACTTTGCCATGGGGCCACCGTGGTGCTGGCTGTGGCTCAGAGCAGGGGCAGTAGGTGCTGGGGCCTGACACCAAGCACTCGTGTGTCCCCATGTCTCAGCAGTGACAGACGGCCACGAGCAGCCCTCGCCAGCAACCAAGGTGGTCACCACTGTGCTCGTCACTGCCGAGCTGGAAAGTAAGCATGTGGCTGCTGCTGGTCTGGCACGGCCCCCAGCCCGAGGTCCTCCTGTTGCAG
Seq C2 exon
CCCCCTCACTGCCCCAGGAACATGGCCCCATCTCCCCCGGGTGTAGCCCACCCACCTCAGGGTTTGCCCCACAGCCCCCGGGATCACCCCACATATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001917:ENSGALT00000040254:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.664 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGGCAGTAAGGATGAAGGA
R:
GTGATCCCGGGGGCTGTG
Band lengths:
349-771
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]