BtaINT0141588 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019712 | ST14
Description
suppression of tumorigenicity 14 (colon carcinoma) [Source:HGNC Symbol;Acc:HGNC:11344]
Coordinates
chr29:36963957-36964277:+
Coord C1 exon
chr29:36963957-36964067
Coord A exon
chr29:36964068-36964163
Coord C2 exon
chr29:36964164-36964277
Length
96 bp
Sequences
Splice sites
5' ss Seq
GCAGTGAGT
5' ss Score
7.39
3' ss Seq
TGAGTCCTTGTGCTCCCCAGGCT
3' ss Score
7.22
Exon sequences
Seq C1 exon
AGTGCAACGCCACCTACCAGTTCACATGCAGGGACAAGTTCTGCAAGCCCCTGTTCTGGGTCTGTGACTCTGTGAAGGACTGTGAGGACGGCAGCGACGAGGAGGGCTGCA
Seq A exon
GTGAGTGTGGCCGGGGTCCGGGCGGGGATCGCTGCCCAGCTCCCCGTGGCCTCTCTGCTGGCCCTCGAGCCTCTGCTGAGTCCTTGTGCTCCCCAG
Seq C2 exon
GCTGCCCGCCCAATACCTTTAAGTGCGGCAACGGGAAGTGCCTCCCTCAGAGCCAGCAGTGTGACAGGAAGGACGACTGTGGCGACGGGTCCGATGAGGCCAAGTGCCAAGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019712:ENSBTAT00000026272:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=97.4),PF0005713=Ldl_recept_a=PU(0.1=0.0)
A:
NA
C2:
PF0005713=Ldl_recept_a=WD(100=92.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGCAGGGACAAGTTCTGCA
R:
ACAGTCGTCCTTCCTGTCACA
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]