MmuINT0153107 @ mm10
Intron Retention
Gene
ENSMUSG00000031995 | St14
Description
suppression of tumorigenicity 14 (colon carcinoma) [Source:MGI Symbol;Acc:MGI:1338881]
Coordinates
chr9:31096854-31097183:-
Coord C1 exon
chr9:31097073-31097183
Coord A exon
chr9:31096968-31097072
Coord C2 exon
chr9:31096854-31096967
Length
105 bp
Sequences
Splice sites
5' ss Seq
GCAGTGAGT
5' ss Score
7.39
3' ss Seq
AAGGATCTGTGTCTCCATAGGCT
3' ss Score
9.5
Exon sequences
Seq C1 exon
GATGCAATGCCACCCACCAGTTCACGTGCAAAAACCAGTTCTGCAAGCCCCTCTTCTGGGTCTGTGACAGTGTCAACGACTGTGGGGACGGAAGTGACGAGGAGGGCTGCA
Seq A exon
GTGAGTACCTTGGGATTGGGTGGGGGCTGCTATGGCCCCCCAGTGCCCTTTTGGCCCAATGAGTCAGGGCACGCTGAAGGGTGCTAAGGATCTGTGTCTCCATAG
Seq C2 exon
GCTGTCCTGCTGGGAGTTTCAAGTGTTCCAATGGGAAGTGTCTCCCTCAGAGCCAGAAGTGTAATGGGAAGGACAACTGTGGAGATGGGTCTGACGAGGCTTCATGTGACAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031995:ENSMUST00000034478:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=97.4),PF0005713=Ldl_recept_a=PU(0.1=0.0)
A:
NA
C2:
PF0005713=Ldl_recept_a=WD(100=92.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATGCCACCCACCAGTTCAC
R:
GCTGTCACATGAAGCCTCGTC
Band lengths:
220-325
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types