BtaINT0141812 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014782 | STAB1
Description
Bos taurus stabilin 1 (STAB1), mRNA. [Source:RefSeq mRNA;Acc:NM_001205570]
Coordinates
chr22:48885074-48885421:-
Coord C1 exon
chr22:48885302-48885421
Coord A exon
chr22:48885224-48885301
Coord C2 exon
chr22:48885074-48885223
Length
78 bp
Sequences
Splice sites
5' ss Seq
ACGGTAACG
5' ss Score
7.77
3' ss Seq
CAGCTGTGCTGTGCCCACAGACC
3' ss Score
8.51
Exon sequences
Seq C1 exon
ATGCTACTGGGCTACGCCAATGCCACCCCGAGGGGTCTCGAGTTTCTGGACTTCCTGGATGACGAGCGCACCTACAAGACGCTCTTCGTCCCTGTCGATGAAGCTTTCACCGACAACACG
Seq A exon
GTAACGGGGAGTGTGGGGAGCACAGGGCCTGACTCTGCTTGCTGTGCTTGGTCCACAACAGCTGTGCTGTGCCCACAG
Seq C2 exon
ACCCTGAGCGGTCCAGACCTGGAGCTGCATGCCTCCAACACCACCTTCCTGAGCGCCAACGCGAGCCAGGGTGCCCTGCTTCCCGCGCACTCGGGCCTCAGCCTCGTCATCGGCAACCTGGGCCCTGGCAACAGTTCTCGGGCCCCTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014782:ENSBTAT00000019663:64
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCGTCCCTGTCGATGAAGC
R:
GAGAACTGTTGCCAGGGCC
Band lengths:
176-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]