HsaINT0160015 @ hg38
Intron Retention
Gene
ENSG00000010327 | STAB1
Description
stabilin 1 [Source:HGNC Symbol;Acc:HGNC:18628]
Coordinates
chr3:52523222-52523576:+
Coord C1 exon
chr3:52523222-52523341
Coord A exon
chr3:52523342-52523426
Coord C2 exon
chr3:52523427-52523576
Length
85 bp
Sequences
Splice sites
5' ss Seq
ATGGTAACC
5' ss Score
5.31
3' ss Seq
AGGCCTTGCTCTGCTCACAGACG
3' ss Score
6.71
Exon sequences
Seq C1 exon
ATGCTATTGGGCTATGCCAATGCCACCCAGCGGGGTCTCGACTTCCTGGACTTCCTGGATGATGAGCTCACGTATAAGACACTCTTCGTCCCTGTCAATGAAGGCTTTGTGGACAACATG
Seq A exon
GTAACCCCCAAGGGTGTGGGCAGAGCAGAGCCTGCATTGGCCATCTCCATCTGGCCCAGGCCAACAGGCCTTGCTCTGCTCACAG
Seq C2 exon
ACGCTGAGTGGCCCAGACTTGGAGCTGCATGCCTCCAACGCCACCCTCCTAAGTGCCAACGCCAGCCAGGGGAAGTTGCTTCCGGCCCACTCAGGCCTCAGCCTCATCATCAGTGACGCAGGCCCTGACAACAGTTCCTGGGCCCCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000010327:ENST00000321725:64
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.030
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGGATGATGAGCTCACGT
R:
CACTGATGATGAGGCTGAGGC
Band lengths:
183-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains