BtaINT0141816 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014782 | STAB1
Description
Bos taurus stabilin 1 (STAB1), mRNA. [Source:RefSeq mRNA;Acc:NM_001205570]
Coordinates
chr22:48884238-48884585:-
Coord C1 exon
chr22:48884469-48884585
Coord A exon
chr22:48884387-48884468
Coord C2 exon
chr22:48884238-48884386
Length
82 bp
Sequences
Splice sites
5' ss Seq
GATGTGAGT
5' ss Score
7.77
3' ss Seq
ACCGACAGCCGCCCGCTCAGGAC
3' ss Score
0.17
Exon sequences
Seq C1 exon
GCAGAAGATGCTGCTGCTGACGACTTCTCCCCGTGGCAGGAAGGGACCAGCCCACCTCTGGTCTCCGTCCCTAACCCGGTCTTTGGTAGCCATGAGGCCTTTTGTGAACCCTTTGAT
Seq A exon
GTGAGTGGGGTTGGGGGGGGGGTGGCAAGGGGACCTGGGACCCAGCCTCGGCCCAGACACTAACCGACAGCCGCCCGCTCAG
Seq C2 exon
GACTCGGTCCTGGAGGAGGACTTCCCCGACACACAGAGGATCCTCGAGGTGAAGTGACGCAGAGGCACGAGGGAGACGGCTTTTATTGCCCGGAGAGGGCGGGACAGGTGGGGCTGGGCCTGATCCAGACAATAAAGGTACTCTCAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014782:ENSBTAT00000019663:68
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.103 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAAGATGCTGCTGCTGACG
R:
CACCTCGAGGATCCTCTGTGT
Band lengths:
167-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]