BtaEX6094842 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014782 | STAB1
Description
Bos taurus stabilin 1 (STAB1), mRNA. [Source:RefSeq mRNA;Acc:NM_001205570]
Coordinates
chr22:48884238-48884814:-
Coord C1 exon
chr22:48884668-48884814
Coord A exon
chr22:48884469-48884585
Coord C2 exon
chr22:48884238-48884386
Length
117 bp
Sequences
Splice sites
3' ss Seq
CAACTCACCTGCCTTTCTAGGCA
3' ss Score
7.94
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
TGGGCAGTGGTGGCCCCAGAGGCCCCGCCTGTGGCAGCGGGCGTGGGGGCTGTGGTGGCTGCTGGAGCCGTCCTTGGCCTGGTGGCCGGAGCCCTCTACTTTCGTGGCCGAAGCCGGTCCGCGGGCTTTGGCTTCTCTGCCTTCCAG
Seq A exon
GCAGAAGATGCTGCTGCTGACGACTTCTCCCCGTGGCAGGAAGGGACCAGCCCACCTCTGGTCTCCGTCCCTAACCCGGTCTTTGGTAGCCATGAGGCCTTTTGTGAACCCTTTGAT
Seq C2 exon
GACTCGGTCCTGGAGGAGGACTTCCCCGACACACAGAGGATCCTCGAGGTGAAGTGACGCAGAGGCACGAGGGAGACGGCTTTTATTGCCCGGAGAGGGCGGGACAGGTGGGGCTGGGCCTGATCCAGACAATAAAGGTACTCTCAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014782-'75-92,'75-91,76-92=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.103 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTGGTGGCCCCAGAG
R:
CCTCTCCGGGCAATAAAAGC
Band lengths:
242-359
Functional annotations
There are 1 annotated functions for this event
PMID: 20599701
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: alanine scanning, competition binding, glutathione s tranferase tag, pull down. ELM ID: ELMI001568; ELM sequence: SVPNPVFG; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]