MmuEX6040472 @ mm10
Exon Skipping
Gene
ENSMUSG00000042286 | Stab1
Description
stabilin 1 [Source:MGI Symbol;Acc:MGI:2178742]
Coordinates
chr14:31139013-31139653:-
Coord C1 exon
chr14:31139507-31139653
Coord A exon
chr14:31139297-31139413
Coord C2 exon
chr14:31139013-31139203
Length
117 bp
Sequences
Splice sites
3' ss Seq
AGTCAATACTCCTCTTATAGGCA
3' ss Score
4.8
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
AGGGCAGTGCTGGGATCTGAGCCTCCACCTGTGGCATTAAGCTTGGGGGTTGTGGTAACTTCTGGAACACTGCTGGGGCTGGTGGCGGGAGCTCTCTACCTGCGTGCCCGAGGCAAACCTCCAGGTTTCAGCTTCTCTGCCTTTCAG
Seq A exon
GCAGAAGATAATGCAGACGATGACTTCTCCCCATGGCAAGAAGGGACCAGCCCAACCCTGGTTTCTGTCCCCAACCCTGTTTTTGGCAGCAGTGACATCTTTTGTGAACCCTTTGAT
Seq C2 exon
GATTCAGTCCTGGAGGAGGACTTCCCCGACACCCAGAGGGTCCTCAAGGTCAAATGATGAGCTGGAATGAAGCAGAGGCTCTGAGAAGACACAGACCATTTTTATTGCTTGTCAGGGTGGCTGAGGGGGCCAATGGTCTGTCCAGGACAATAAAAGTGCCCTCAGCGGATGTGGGCCATGTCACCAAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042286-'86-119,'86-115,87-119=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=0.333 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGTGGCATTAAGCTTGGG
R:
CAGCCACCCTGACAAGCAATA
Band lengths:
244-361
Functional annotations
There are 1 annotated functions for this event
PMID: 20599701
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: alanine scanning, competition binding, glutathione s tranferase tag, pull down. ELM ID: ELMI001568; ELM sequence: SVPNPVFG; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types