DreEX6097721 @ danRer10
Exon Skipping
Gene
ENSDARG00000076484 | stab1
Description
stabilin 1 [Source:ZFIN;Acc:ZDB-GENE-050208-554]
Coordinates
chr22:10251738-10254776:-
Coord C1 exon
chr22:10254630-10254776
Coord A exon
chr22:10252632-10252736
Coord C2 exon
chr22:10251738-10252517
Length
105 bp
Sequences
Splice sites
3' ss Seq
TCTTATTTATCATTTAACAGAAT
3' ss Score
8.02
5' ss Seq
GGGGTAAAA
5' ss Score
2.56
Exon sequences
Seq C1 exon
GTTCCAGCAGTTCTTCCGATCACGCAGTCCAGCGGTGTTGCAGTGACCACTGTGCTGGTTGTCATAGCGATTGTTTGTATTGTTGCTGGACTGGCGTACTATGTCCTCAGGCACAAGAACGACGCCTTTCGTTTCCAGTATTTTAAA
Seq A exon
AATGATGATGAAGATGGGGCTTCTACAAAAGCTGGTGGAAACGCATTAGTATCCATCCCAAACCCTCTCTACAGCGGCTACAGGGCGTTTGCGGAACCATTTGGG
Seq C2 exon
GATTCAGCAGCTACAGACACACCCAACCTCATCGACTAGCACAGACAGCAGCGTTAAACTCTCCCTTCATTTACCTGCAATCAGCTGACCGCTCTTAAAATAAAGGTTCTGTATTGGCATTGATGGTTCCGCGAAGAATCTTTATAAGCCATAACATCTTTCCATTTCCATGAGGTGTAAAAAGACTCTTTAGAATATTAAAATGTTACTTCATAAACATTTGATGTGTTTGATTGCAGATACTTCAGAGTGTTTAACTTCCACCCATTTATTTCTGCGTTTCACACATATTTTTGACTAAAAATGTTCTTTACATTAAGAAAAAATGGTGTACTCACCCTCAAGTAGGTCCAAACCTTCACGAGTTTCTTTTTTTGCCTTCTGTTGAACACAAACAAGAAAATATTTTGATAATGCGTTAAGCAAGGGGCCATTAGCTGTTTTGATCCAACTTTTTTCATGCGCATTTTAAATTATCGCATGTAAAAAAGCTTAATGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076484-'67-75,'67-74,68-75=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.057 C2=0.167
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACCACTGTGCTGGTTGTC
R:
TCTTCGCGGAACCATCAATGC
Band lengths:
242-347
Functional annotations
There are 1 annotated functions for this event
PMID: 20599701
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: alanine scanning, competition binding, glutathione s tranferase tag, pull down. ELM ID: ELMI001568; ELM sequence: SVPNPVFG; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]