BtaINT0141879 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006010 | STAB2
Description
Bos taurus stabilin 2 (STAB2), mRNA. [Source:RefSeq mRNA;Acc:NM_001206679]
Coordinates
chr5:67770129-67774608:+
Coord C1 exon
chr5:67770129-67770235
Coord A exon
chr5:67770236-67774488
Coord C2 exon
chr5:67774489-67774608
Length
4253 bp
Sequences
Splice sites
5' ss Seq
AAGGTCTGT
5' ss Score
6.43
3' ss Seq
CACCTCCTTCCTATCCCCAGGAA
3' ss Score
10.56
Exon sequences
Seq C1 exon
ATGTGAACTGCACCTGCAAGGTGGGCTACGTGGGAGATGGCTTCTCGTGCAGTGGAAATCTGTTGCAGGTCCTAATGTCCTTCCCCTCACTCACAAACTTCCTAAAG
Seq A exon
GTCTGTACCACATCTGTTCGCTTTCACCTTGGGGTGGAGGGGTGAACTCAAAGCAGATATGAGAGAGTCTAGTCCTTGAGAGAAGGCGGAGGCTCACAGTCACGGTTGAGAGTGTGGACACAGCCGCACTGCCCAAATTTGACACTTAGATTTGCCACTTACTTGGTGCGTCACCTTAAATGAGTTGCTTTCCCTTCTGGGCCTCAGTTTGCTCATCTGTAAAATGGAGATGACACAATCTCATAGGGTAAGGTGATAAATAAATGACTTGATATTTGTAAAGTGCTTAGCCCTGTGGCCAGCAGATGGAAAATGCTATCCTGGTGTTAGCTGGTAACTCATCTATCTGTTTGCGACTACAGCAGCTTCAGAGTCTGCCCTGTAGAAATAAGTTGCTCTTCTGTCTTCATGGACAGGGTGGGGCACAGTTAAGTCTGCCTGGTGATCACCCAGTGGCCAAATTCTCAATATATAGTCAACTTGCATTCTTCACTGTACTTTTATCTTTAAAAAAAAAAAAATTTAGTTTTGCCCATGCTACATGGCTTGCAAGATCTTAGTTCCCCAACTAAGGATCAAACCCACACCCTCAGCAGTGAAAGCACTGAGTCCTAACCATTAGCCCACCAGGGAATTCCTGCACTGCATTTAAAGTCACTTTAATATGCTACAAGTCATGTCCAATGAAGAGAAAGTCCCTGTTAGAGAAAGAATTGGTGTTGACTATGAATATGAGAGTTGGACTATGAAGAAAGCTGAGCACCAAAGAATTGATGCTTTTGAACTGTGGTGTTGGAGAAGACTCTTGAGAGTCCCATGGACTGCCAGGAGATCCAACCAGTTCATTCTAAAGATCAGTCCTGGGTGTTCTTTGGAAGGAATGATGCTGGGGCTGACACTCCAGTACTTCGGCCACCTCATGCAAATAGTTGACTCATGGAAAAGACTCTGATCCTGGGAGGGATTGGGGGCAGGAGGAAAGGGGGATGACAGAGGATGAGATGGCTGGATGGTATCACCAACTCAATGGACGTGGGTTTGGGTGAACTCCGGGAGTTGGTGATGGACAGGGAGGCTTGGCATGCTGCAATTCATGGGGTCACAAAGAGTTGGACACAACTGAGCAACTGAACTGAACTGAACTGAACTGATGGGAAGACTACACAGAAGAAATATATTAAAAAGATCTTCATGACCCAGGTAACCATGATGGTGTGATCACTCACCTAGAGCCAGACATCCTGGAATGTGAAGTCAAGTGGGCCTTAGAAAGCATTACTATGAACAAAGCTAGTGGAAGTGATGGAATTCCAGTTGCGCCATACTGTTAAAGTGCTGCACTCAATATACTAGCGAATTTGAAAAACTCAGCAATGGCCACAAGACTGGAAAAGGTCAATTTTCATTCCAATCCCAAAGAAAGGTAATGCCAAAGAATGTTCAAACTATTGCACAATTGCACTCATCTCACAATTGCACTCATCTCATACACTAGCAAAGTAATGCTCAAAATTCTCCAAGCCAGGCTTCAACAGTTCATGAACCATGAACTTCCAGGTGTTCAAGCTAGATTTAGAAAAGAGATCAAATTTCCAACATCCATTAGATCATCAAAAAAGCAAGAGAGTTCCAGAAAACTATCTACTTCTGCTACACCAAAGCCTTTGACTGTGTGGATCACAATAAACTGTGGAAAATTCTTCAAGAGATGGGAATACCAGACCACCTGACCTGCCTCCTGAGAAATCTGTATGCAGGTCAAGAAGCAACAGTTAGAACCAGACATGGAATAACAGACTGGTTCCAAATTGGGAAAGGAGTACATCAAGGTTGTATATTGTCACCCTGCTTATTTAACTTATATGAGTACATCATGTGATATGCTGGGCTGGATGAAGCACAAGCTGGAATCAAGATTGCTGGGAAAAATATCAATAACATCAGATATACAGATGACACCACTCTTATGGCAGAAAGCGAATAAGAACTAAAGAGCCTCTTGATGAAAGTGAAAGAGGAGAGTGAAAAAGTTGGTTTGAAACTCAATATTCACCAAACTAAGATCATGGCATCTGGTCCCATCACTTCATGGCAAATAGATGGGGAAACAATGGAAACAGTGAGAGACTTTATTTTCTTGTGCTCTAAAATCATTGCAGATGTTGACTGCAGCCATGAAATTAAAAGAGGCTTGCTCCTTGAAAAAAAAAGTTATGACCAACCTAGACAGCATATTAAAAAGCAGAGACATTACTTTGCCAACAAAGGTCCATCTAGTCAAAGCTATGGTTTTTCCAGTAGTCATGTATGGATGTGAGAGTTGGACTATAAAGAAAGCTGAGCACCAAAGAATTGATGCTTTTGAATTGTGGTGTTGGAGGAGACTCTTGAGAGTCTCTTGGACTGCAAGGAGCTCAAACCAGTCCATCCTAAAAGAAATCAGTCCTGAATATTCATTGGAAGGGCTGATGCTGAACCTGAAACTCCAATACTTTGGCCACCTGATGTGAAGAACTGACTCACTGGAAAAGACCCTAATGCTAGGACAGATGGAGAAGGCAATGGCAACCCACTCTAGTGTTCTTGCCTGGAGAATCCCAGGGATGGGGGAGCCTGGTGGGCTGCAGTCCATGAGGTCACACAGAGTCGGACACGACTGAAGCAACTTAGCAGCAGCAGCTGGGACAGACTGAAGGCAGGAGGTGAAGGGGATGACAGAGGATGAGATGGTTGGATGGCATCACTGACTCGATGCACATGAGTATATGCAAGCTCCAGGAGTTGGTGATGGACAGGAAAGCCTGGTGTGCTGCAGTCCATGGGGTCACAAAGAGTCAAACACAACTGAACAACTGAGCAACTGAACTGAACTTATCAAAGAACTGAGCTTTGATATTAATAACAGCAATAATAACAATAGCTAACATGTCCTGTGCATTTTCTTCACACGAGGCATTCTCTGAGGCCGTTCAGGTTACTTTTCACTTGCTTCACAAAACATAAGCTCCATAAGGGAAATTATTTTCTCCGCCTTGTGGCTAGCATATAGTAGGTGCTCAGTAATACTTGTTACACAGAATAAATCCTTATGCAACCTTATGAAGTCACTTTTGCCATTATTTCCATTTTGCAGATAAAGAAACTGAGGCTTAGCAAGGTCAAGGACACAGCCAAGGAGAGGGGACAGAGCATAAGTACAGGGCTTGTAGGAACAGGGCAGAAGCTAGACCCAGGACCCCAAAATAGTGAGTCTTTGTCCACAGACCACTTAACTAGCCTAAAAACTCAGGGTTACTGTAAATATTCTAAAGATGAACACCCAAACCAATGTTTGTGCTGTGTGGGAGTGTGGCTTGTGACAGCATCTCAGATAAGACTTTGTAGAACAAAACCCACTGGCTGTGTGCCCTTCAGCAAATTCTCAACTTCTCTGGGCAGCAGCAGGGCTCTCTGCACGATGACAGTGCTGAAGTGCATAGTGCGATTTCTTAAAATCTGTTCAGTGAATATTTATTGAGTACTTAACAATGTGCTTGAGATATATCAGTGAACAAAACAGACAAGAAACAGAATAAAGCGAATAGTATTGAATGCTAGAAGGTGATCTAGACTATGGGGGTGGGGAGGGGACCCACAGGGTTCCCATGTTGCCTAGAGTGATGAGAGAAGGCCTTAGTGAGAAGGTAAGATGTAAACAAAGTGTGGACAGAAGAGAGGAAGTTAGCCATGCAGATTTCAAGGAAGAATATTCCAGGCGTAAGGAACAGCCAGGCAAAGGATGAAAGGCAGGACGTTGCTGAGCAAGCCTGAGGAACGTCAAGGAGGCCAGTGTGGCTGGGGCAGGGTGAGCAAGAGGACAGCTGGGTGCAGGGTCAGAGGAGCAAGACTCCAGGTGGTTTGGGCCTCGTGGGCACTGTAAGGACTTTGGCTTTTCCTCTGGGTGAAGCGGGCGCCTTGCAAATTTTTGGCAAAAGAAGACTCCGGAATTCACTTAAGATTTCAAAGCCTACACAAGCTGCCTTGTTGAGAATGGCCTGTGATCTGGCTGTGTCTTAGGACCATAAGATTTATCAAGGAAAGGAAAAATCCTCCTAAAATTTTCCCAAGGGGCAGTCAGAAAGATGAGCAGATGAGTGGCAGCCTGAGCTGGGGTGATCATCAGGAATACTCCAAAGGGGTGATGCCGCCCTCTCCAGCCAGTCCCTCCCTAAACACCACGCTGACCCTTCTGACCACCTCCTTCCTATCCCCAG
Seq C2 exon
GAAGTGCTGGTGTATTCCAACAGCTCAGCCAGAGGCCGGGCATTCCTGAAACACCTGACTGACCTGTCAATCCGAAGCACCCTCTTTGTGCCCCAGAACGGTGGGCTCGGGGAAAACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006010:ENSBTAT00000007896:63
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.025
Domain overlap (PFAM):
C1:
PF129472=EGF_3=PD(50.0=44.4)
A:
NA
C2:
PF0246917=Fasciclin=PU(32.2=95.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]