RnoINT0144393 @ rn6
Intron Retention
Gene
ENSRNOG00000038948 | Stab2
Description
stabilin 2 [Source:RGD Symbol;Acc:628822]
Coordinates
chr7:27376716-27378139:-
Coord C1 exon
chr7:27378033-27378139
Coord A exon
chr7:27376836-27378032
Coord C2 exon
chr7:27376716-27376835
Length
1197 bp
Sequences
Splice sites
5' ss Seq
ACAGTATGT
5' ss Score
6.05
3' ss Seq
ACTTTCTTCTGTCCCCTTAGGAG
3' ss Score
11.38
Exon sequences
Seq C1 exon
ATGTGAACTGCACCTGCAAGGCAGGCTATGTGGGAGATGGCTTCTCGTGCAGTGGGAACCTGCTGCAGGTCCTCATGTCCTTCCCCTCGCTCACAAACTTCCTGACA
Seq A exon
GTATGTATCCTGTCTGCCTCGGCCCTCATCTATAAAATGGGGGTGGCAACAGCAGCCCCCCAGGGTGGTTGTGGTCTTTAAGAGAGTTGGTACTTTGGCACTGTAAGCATGTGGAAACTTCTGGATTCACCAATGCAGGGCAGGTATTGCCTGTGTTTGCATCTAAAACGGTTTAAGAAACTGATCAAACCAAGATAGCATGGCTGTTTCTTATCCCACAAGCACATCATATCAGAAGCAAATGGACACGCTTCTGTCCTTCTACAGAATCAGAACTTATTAACAGTAAACTCACAAGCCGTGTCCATTTTATTGGCTGTAATTTACCATGTGGTCAGTTATCCCCTTGATCAGATGACTGCTATCAACCACGGGTCCTTTTATTCCACTATCAATCTAACTCTTGGACCATCTACACTAATACACACATACACAGGTGACCGATTGGCTACAAGAGGGTAAAAGAGGCCACAAAGTTCAAAGGGAGGCAGTCACCCCAAGTGGTTAGATATTAAAAGAACCTGACAACAGAGACTGGAAGACAGCTCTGGAGGTTTAAGGCAGGCGAGGCTCAGGGTTGGGCAAGTCTGGCTGAACTGCAACTGAACAGGCCCCAGCAAGCCACAGGGACCACACCGAGCTGAAGACCTGGCATTCTCTGCCCCTCGGTCATGAGATGCATGCACAGTACCCGATGGCTGGATGACAGATCAATGAGGACCGGTGTCTCCCCTTTGATGGGTGAGGAGGTTGCATCGACGTCAGGAGGACGTGGTATAAGAACATAGACGATTCCTCCTCAGTTGTGTGAGCGAGCGGTTTATCGGCCTGTGCATCATGGCTCCCGTTAGACGGATGGCGGTGTCTTTGTGCATGTGCGAGACACAGAACCACCCTGCCTCTGGGTTTGCACTCAACATGGAGGCAGCTGCTGCTGTAATGGAGCAGTAACCCATGGCAGGACACAGGCCCTGTGGCAGACAGCAGACAGCAGACAGCAGCAGAGCAGTAACCGGAGCGTCTCAGGCCTGTGGGACTCATCAAGACATCCCGATCCTCTCCCAAGGCCAGGGAGAGGAAGTACAAAGGAAGTCAGACTTGAGCCTTAGCAAAAGGGTCTTTTCAGAGGCTTCTTCTCCAGCTACCCCAACTCCCACACCACAGTGGCCCATCTGACACTTTCTTCTGTCCCCTTAG
Seq C2 exon
GAGGTGCTGGCTTTTTCCAAGAGCTCAGCCCGAGGACAGGCATTTTTGAAACACCTGACTGACCTGTCCATCCGTGGCACCCTGTTTGTGCCACAGAACAGTGGGCTACCGGGAAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000038948:ENSRNOT00000059538:72
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.025
Domain overlap (PFAM):
C1:
PF129472=EGF_3=PD(55.2=44.4),PF0246917=Fasciclin=PU(0.1=0.0)
A:
NA
C2:
PF0246917=Fasciclin=FE(32.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGCAGGCTATGTGGGAGAT
R:
TATTTCCCGGTAGCCCACTGT
Band lengths:
208-1405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]