BtaINT0142443 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005589 | STK19
Description
serine/threonine-protein kinase 19 [Source:RefSeq peptide;Acc:NP_001091466]
Coordinates
chr23:27199782-27200318:-
Coord C1 exon
chr23:27200223-27200318
Coord A exon
chr23:27199922-27200222
Coord C2 exon
chr23:27199782-27199921
Length
301 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
3' ss Seq
TCTCTCATCTCTGGTTCCAGGTC
3' ss Score
10.13
Exon sequences
Seq C1 exon
AAGGCACTGCAAGAGCAGGGGGAGATCAGGATTGTCCAGCTAGGCTTCGACTTGGACGCCCAAGGAATCATGTTCACCGAGGACTACAGGACCAGA
Seq A exon
GTGAGTGTGACTGTGTGTGGGTCATGGGGGCCAGGGTAGGGGGTGCAGGAAAACTAGGGAGTGGGAATAAAAAGAAAAGAGACAACCCCCCCCCCCCCCGCCCCCACCTCACATCTCACAGACAGGGCACAGGGCTCTGATAAAATATTAATATGAGGGAGAGGAAGAAGAGGAGGAGAAGTATGAGATGTAGAAGGCCCTGAGCAGCAGGCAAAACATAGGAAGAGAAATGTGATCCTGGGGACAGAGGTCGGTGGAGGGTTAGGTGGGGCCAGACCACGTCTCTCATCTCTGGTTCCAG
Seq C2 exon
GTCCTCAAAGCTTGTGATGGCCGCCCATATGCTGCCGCAGTACAGAAGTTTCTGGCTTCCGTGCTTCCAGCCTGTGGTGACCTTAGCTTCCAGCAAGACCAAATGACACAGACCTTTGGCTTCAGGGACCCAGAGATCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005589:ENSBTAT00000007341:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF104944=Stk19=FE(14.3=100)
A:
NA
C2:
PF104944=Stk19=FE(21.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCAGGGGGAGATCAGGATT
R:
TGATCTCTGGGTCCCTGAAGC
Band lengths:
223-524
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]