MmuINT0154064 @ mm9
Intron Retention
Gene
ENSMUSG00000061207 | Stk19
Description
serine/threonine kinase 19 [Source:MGI Symbol;Acc:MGI:1860085]
Coordinates
chr17:34968958-34969486:-
Coord C1 exon
chr17:34969391-34969486
Coord A exon
chr17:34969098-34969390
Coord C2 exon
chr17:34968958-34969097
Length
293 bp
Sequences
Splice sites
5' ss Seq
CGGGTCTGT
5' ss Score
3.55
3' ss Seq
GACATCAACTCTGGTTCTAGGTC
3' ss Score
7.47
Exon sequences
Seq C1 exon
AAGGAGCTTCAAGAGCTGGGAGAGATCCGAATTATCCAGCTAGGCTTTGACTTGGATGCTCATGGGATTGTCTTCACGGAAGACTACAGGACCCGG
Seq A exon
GTCTGTGAGAGAGGAGGGAGGGGTGGGGGTGGGGAGTACACCAGTGTGGTGGTCTCAGGAGGGAAGCTGGGCATAGAAATAACTGACATTATGTCTAACCCACATAACCCATAGAGGGCACAGAGTTCTGGTAATTAGTAAGATGGGGAGGAAGGAAGGAAGAGTGGGAGAGGGAAGAAGGAAGCAGGGAAAAAGGGCAGTAGAAGGACCCAGGATTGGGGGTGGGGTCAGAGATAGAGAGCCATGGTGGGGGATGGGCTCATGCTGGTTACCGACATCAACTCTGGTTCTAG
Seq C2 exon
GTCCTCAAGGCCTGTGATGGCCGACCATGTGCTGGGGCGGTGCAGAAGTTCCTGGCCTCAGTGCTCCCAGCCTGTGGGGACCTCAGTTTCCAGCAGGATCAGATGACACAGACTTATGGCTTCAGGGACCCGGAGATCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061207-Stk19:NM_019442:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.006
Domain overlap (PFAM):
C1:
PF047367=Eclosion=PU(2.6=5.9)
A:
NA
C2:
PF104944=Stk19=FE(20.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGAGCTGGGAGAGATCCG
R:
GTGATCTCCGGGTCCCTGAAG
Band lengths:
228-521
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: