BtaINT0142756 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021921 | STRBP
Description
Bos taurus spermatid perinuclear RNA binding protein (STRBP), mRNA. [Source:RefSeq mRNA;Acc:NM_001075739]
Coordinates
chr11:94320344-94321769:-
Coord C1 exon
chr11:94321674-94321769
Coord A exon
chr11:94320456-94321673
Coord C2 exon
chr11:94320344-94320455
Length
1218 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
TGTAATTTAATATCTTCTAGCCA
3' ss Score
6.24
Exon sequences
Seq C1 exon
GCAAGGGCAAATGGATTAAAGTCATGTGTAATTGTCCTCCGCATTCTCCGTGATTTGTGCAACAGAGTCCCCACATGGGCACCATTAAAAGGATGG
Seq A exon
GTAAGTACTTAAATATGATTAAAAGCAAATTATGAAACTATAGTCAGAGGAAATCCTGTAGAAATTATATGTTACTGTATTCTGAATTAGCTAAGGTGTGCATTTATCTATTTTTGTTCTGGGAAAAAATTATAGAGGTTTTTATATGATTTCTTTTTTATGAATTTAATTTGTATTATACATACATTTATATTTATAAATTTACATTAATTTGTAAAATATGTAAATTTAATAAGTAATATAATATCTTCTAGCCACTAGAGCTTATATATGAAAAATGTCTCTTTTACTTCATCATATTCATATTATAGAGACTGAGATAATTTTTCTGACAAAAGGTTCTTTACCTGTTAAAAGTGAGTGTCTTCCTGCACTTTTACTCTCCACTGATGGTTGATTATTATTGACCTACTGCCTGGAAAAGATGCTTGACTGGCACATTTCTCTTTCAGTGCTGCTTCCATTTAAAATAAAAATTACCTGGTATACCAGTATAAGGTTCCCATATCTTGTTTTCCTTTCTCTTTTGAGTACAGACATTTAAAAATAAGTTCATATTAGTAATTAAAGTTAGGTGAATAGTACAGTTAACCGTAGTTTAAAATGTATGTTGCCAAACTTAATTAATTTGGAAATTATTATGCTTGATCCAGTAAAGAACATTATAAAACAAGTGAAGTTATAAAGGGTTATTTTAGATTAATTTAACAATTATTACTTTGATATTGGCATTATGAACCTTTTAGTTTATTAAATATGGAGATTTGGTCCTTTTTTAATTCCAGTTGTACTACTTGGGGCAGGATGTCTGGAATGAAGTCTTATTATGGTTTGAGTCCATCCTAGGTAAAGTGGGAGATAGGTGGGCTGGGTTTGAACACTGATTATTTATTGGCCATTACTAACCTACATGAAGGCTTGTTAAATCTTTGTTAAGTTAGATGACTGCAGTTTCTTTAGTAATCCTTTCAGGGTAACTGAAAATAAACTTTTTGTAGCAAAAAGTCTTCTGAATATGTACTCTCAAAAAGAGTTGATTTAAGCACTCTGGCTGGGGTAAAACTTGATAATCAAGTGGGAAAAAGTTAATTGGGCCCTAAATGTTAAATGGACTTTAACCTTTTGGCCTCCATTGTAGATAGAAATGTCAGCTCACATTTAACTGGAAACCTTTTAACACTTGGTGCATGTACTAATTTGTAATTTAATATCTTCTAG
Seq C2 exon
CCACTAGAGCTTATATGTGAAAAGTCTATAGGTACTTGTAATAGACCTTTGGGCGCTGGGGAGGCCTTGAGACGAGTAATGGAGTGTTTGGCATCTGGAATTCTACTTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021921:ENSBTAT00000029226:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(12.5=100)
A:
NA
C2:
PF075289=DZF=FE(14.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGGGCAAATGGATTAAAGTCA
R:
GGAAGTAGAATTCCAGATGCCA
Band lengths:
206-1424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development