RnoINT0145350 @ rn6
Intron Retention
Gene
ENSRNOG00000010150 | Strbp
Description
spermatid perinuclear RNA binding protein [Source:RGD Symbol;Acc:620673]
Coordinates
chr3:21876112-21877487:-
Coord C1 exon
chr3:21877392-21877487
Coord A exon
chr3:21876224-21877391
Coord C2 exon
chr3:21876112-21876223
Length
1168 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
TGTAATTTAATATCTTCTAGCCA
3' ss Score
6.24
Exon sequences
Seq C1 exon
GCAAGGGCAAATGGATTAAAATCATGTGTAATTGTCCTCCGCATTCTGCGTGATTTGTGCAACAGAGTACCCACATGGGCACCATTGAAAGGATGG
Seq A exon
GTAAGTACTTAAATGTGACTAAAAAAATATGAAGCTATACCAGATGAAATTCATGAAATGTCATTACTATTACTATATTCTGAGTTAGTTAAGGCAAATGTTGTCTGTTTTTGACCTAGAAATATTCAGTTTTATGAAATCTTTTATGCATATAACTTCTCTTTTGTCATTTGTTTTAGACCTGATATGTATATAAATTTTAAAATCTATATTATTATCATTATCGTCGTTGTTGTTTCTGACTTAAAGGTTTTATGCTTTTTAGAAGTAGGTGCTGTTCTTCCTTGAATTCTGTATGGATCATTGATCACTCATGGATCACTCGTTGCTCATGATAGCCTTTTTGGATGACCCATTGCCCTCAGTGTATTGTTCCATTTGTGTGGAGATTATTTGATAGAATGGTGTCCTTTGAATTTCTCATGAAATGTAGACACAAATCCTAACATGTTAATTCAAGTGCAGTGTTACAATATATACTTTAAAGTATGTCTGCCATTAAGTTAAGCGCAGTGTTTTCCTGATACTAATTACTAATTATGGACATAACATATATTGTAACATTGACTTAATTTGGAAATTATGCCTGACCCAGTCAGGACTAGAATTTTAAAATTTATAAAAATAATTTAATGTTGTAAAGGCTCATTCATAAAATAATGAACAACTATGATTATTTGTACAGCATCATGAATTTCATTTTATCTAATGTAGAGATGCGTTTCTTTGTTTATTGTAATTATTGCTCTTGAAGTAAGCTGTTTGAATGAACTCTTTTTATAGTTGAGTGTTTCCTAACTTAAGTAGGATTTAAAACTTGTTAATTGTAAATTATTATATCACTTTAGGTTTTTAAAAAAAATTAGGGCAATTAAAAATAAGGTTGTTTTCTCAAATGTTTTTAGAAAATATCTAAAAGTACTTGGTTTAAAAACTGGGTACTGGAGAGATGTCTCAGCTGTCAAAAAGCTAGGCTCACAACTAAAAATATAAAAAAAAATGGTTGGATTAGAGTAGATAATCATGGGATAAGGGTTAAATGTTCCTTAAATGCTAAATTGTCTACACTTTTTTGGCTTCTCTTTTAGATAGAATTGTCAGCTCACGTTTAACTGGAATCCTTTTAACACTTGGTGCATGTACTAATTTGTAATTTAATATCTTCTAG
Seq C2 exon
CCACTAGAGCTTATATGTGAAAAGTCTATAGGTACTTGTAATAGACCTTTGGGCGCTGGGGAGGCCTTGAGACGAGTAATGGAGTGTTTGGCATCTGGAATACTACTTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010150:ENSRNOT00000066377:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(12.5=100)
A:
NA
C2:
PF075289=DZF=FE(14.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGGGCAAATGGATTAAAATCA
R:
GGAAGTAGTATTCCAGATGCCA
Band lengths:
206-1374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]