BtaINT0143064 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009178 | STXBP2
Description
syntaxin binding protein 2 [Source:HGNC Symbol;Acc:HGNC:11445]
Coordinates
chr7:17714378-17715267:+
Coord C1 exon
chr7:17714378-17714473
Coord A exon
chr7:17714474-17715181
Coord C2 exon
chr7:17715182-17715267
Length
708 bp
Sequences
Splice sites
5' ss Seq
GAGGTACCG
5' ss Score
8.5
3' ss Seq
GCCTCCCTCTCCGGCCCTAGGAT
3' ss Score
10.74
Exon sequences
Seq C1 exon
AGCTCTGGGACCACCAGCCGACTGGAGCGGAGGGAGCGCTCAGAGCCCACCTATCAGCTGTCTCGCTGGACCCCGGTCATCAAGGATGTGATGGAG
Seq A exon
GTACCGCTGGTAGGGGTGGGACCTGAGTTCCCCGATCCAGGCCATGCTCAGCCCCCTCCCTGCTCACTGTCCTAAGCCCCAGGGCTTAAGAGAAAATCCCTCATTACGGGCATCCCCGTGGCTCTGCCTGGGGTCTGGTGGCAACCCCATCCCACACTGGAGGAACAGGGGCGCATACAGAGAGAAGAGCTTCATCTTCTCTCCACTTGCTGGCCCCCTCTTCTGTCCCCCTCTATTCACTCCTGCCCCCCAGGACGCCACCTGGGTCCCACTTTGCCCTGCCCATACCAACCCCAGCCCCACTGTGGGAGCCAAAAGCAGCAGCAGCCTAAAAGACCTGGTCAGGGACCTGGCTTCCTGCTTCCTGCCGTCTGTATGGAGTCCTGGCATCTCTGCCTGCTTGGAGACCCCCTTATCCTTATGGATCCTGGATGCCTAGACCTCTGGGTTCCTGAGGGGTTAGGGGCTCAGAATCTTGGCTTCTCCAGGGGCTGGAGGTCCACACTCCTGGGTCCCTGAGGAGCTGAGCAGGAGCAGGGTCCTTAAGAAGCTAAGAGGCCGGGTCCTGGGTCATTAAGGGGCTGGAGGTACAGGTGGCAGCCCCTGTCTGCCAGGATCTTGGCCCGGGAACATACCCGATGGAGGAGGCTCCAGACCTTGGGCCTCATTGCCCGGGCCCCTCTCCTCAGCCTCCCTCTCCGGCCCTAG
Seq C2 exon
GATGCTGTGGAAGACCGGCTGGACCGGAAGCTGTGGCCCTTTGTGTCTGACCCTGCCCCCACATCCAGCTCCCAGGCTGCCGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009178:ENSBTAT00000012094:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.469 A=NA C2=0.138
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(5.6=100)
A:
NA
C2:
PF0099518=Sec1=FE(5.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]