HsaINT0161409 @ hg38
Intron Retention
Gene
ENSG00000076944 | STXBP2
Description
syntaxin binding protein 2 [Source:HGNC Symbol;Acc:HGNC:11445]
Coordinates
chr19:7646249-7647247:+
Coord C1 exon
chr19:7646249-7646344
Coord A exon
chr19:7646345-7647161
Coord C2 exon
chr19:7647162-7647247
Length
817 bp
Sequences
Splice sites
5' ss Seq
GAGGTACTG
5' ss Score
7.67
3' ss Seq
ACCTGCCTCTCGGCCGCCAGGAC
3' ss Score
8.37
Exon sequences
Seq C1 exon
GGCTCGGGGACCTCCAGCCGGCTGGAGCCGAGAGAACGCATGGAGCCCACCTATCAGCTGTCCCGCTGGACCCCGGTCATCAAGGATGTAATGGAG
Seq A exon
GTACTGGGTGGCAGGTCAGGGTGGGGGCCAGCCCTCCGCATCGGCTGGCGGCTCAGCCTCCCTCCTGCTGAGGTGCTAAGCCTCAGGGCTTAGGGGAAAATGCTCATTGCTGGCATTCCCTTGGCACCGATCTGCTCTGCTGAGGGGGGCACGCCAAGCCCGCAGCTGAGGAATTGGGGTGACAGCGGGGCCTGTGCTGGGGAGCCTCACTTCCTCCCCACCTGCCGGCTGCCTCCGCTATATCTCTCTAGTCTGTTCCCCTGTCCCGCAGGAGTGCCCCTGAGCCCCAGCCCTGGCCTTCCCAGGATCCCAGGGCAGCACCATCCAATGGCAATGGGCCTGGGGCGGCTTCCTGGCTTCCTCCTTGTCCCTCTAAGAGCCCCGGCCCCTCTTTCTGCGTGGGGGCCAGAGACCTGGGCCTCCTCATCCCCATGGACCTTGAATACCTGGACTTCTGGGGCTCTGAGGGGCTGAGAGCCCAGACACTGGGTTCCCCAAAGGGCTGGGGGTATTGACTGATGGTCCCCAAGGGCCTGGAGGCCCAGACTACTGGGTTGCCGAGGAACTGTGGGTTTAGACTTCTGGGTACCCAAGGAGTTATGGAATTAGATTCGTGGGTCCCCAGTGAGTTATGGATCTAGATTTCTAGGTCCCCAATGGACTAGAGGCCTAGACTCCTGGGTCCCCCAGAGGCAGGAGGTGGAGATGCTGGTTCCTGTCTGCCAGGATCTTGGCCCCTGAATACCCCGTGGGGGGCACTCCTGACCCCGGACCCCATGCCTGGGGTTCCTCCCCTAACCTGCCTCTCGGCCGCCAG
Seq C2 exon
GACGCCGTGGAGGACCGGCTGGACAGGAACCTGTGGCCCTTCGTATCCGACCCCGCCCCCACGGCCAGCTCCCAGGCCGCTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076944:ENST00000221283:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.461 A=NA C2=0.117
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(15.0=100)
A:
NA
C2:
PF0099518=Sec1=FE(13.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains