BtaINT0143070 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009178 | STXBP2
Description
syntaxin binding protein 2 [Source:HGNC Symbol;Acc:HGNC:11445]
Coordinates
chr7:17709665-17709944:+
Coord C1 exon
chr7:17709665-17709743
Coord A exon
chr7:17709744-17709840
Coord C2 exon
chr7:17709841-17709944
Length
97 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
3' ss Seq
CCCGTCTTGCCCATTCCCAGCCT
3' ss Score
5.96
Exon sequences
Seq C1 exon
TCGGTACAGGCCCTGATCGCAGATTTCCGGGGGACCCCGACCTTCACCTACAAAGCCGCACACGTCTTCTTCACCGACA
Seq A exon
GTGAGTGAGGAGAGCCGGGTAGGGGTACGGTGTGGGGGTCAGGGTAAGGGGGTGTGAGGGCTGCCCTGGCCTGATGCCCCGTCTTGCCCATTCCCAG
Seq C2 exon
CCTGCCCTGAGCCCCTGTTCAGTGAGCTGGGTCGCTCCCGTCTGGCAAAGGTGGTGAAGACGCTGAAAGAGATCCACCTTGCCTTCCTCCCATACGAAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009178:ENSBTAT00000012094:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(4.7=100)
A:
NA
C2:
PF0099518=Sec1=FE(6.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACAGGCCCTGATCGCAGA
R:
TATGGGAGGAAGGCAAGGTGG
Band lengths:
170-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]