HsaINT0161414 @ hg38
Intron Retention
Gene
ENSG00000076944 | STXBP2
Description
syntaxin binding protein 2 [Source:HGNC Symbol;Acc:HGNC:11445]
Coordinates
chr19:7640731-7641003:+
Coord C1 exon
chr19:7640731-7640809
Coord A exon
chr19:7640810-7640899
Coord C2 exon
chr19:7640900-7641003
Length
90 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
3' ss Seq
CCACTCCTGCCTCACCCCAGCCT
3' ss Score
5.64
Exon sequences
Seq C1 exon
TCGGTTCAGGCCCTGATCAAAGACTTCCAGGGGACCCCGACTTTCACCTACAAAGCGGCCCATATCTTCTTCACCGACA
Seq A exon
GTGAGTGAGGAGAGCCTAGGGTGTTGGTGGGTGGGGCAAGGAGGTGTGGGGGCTGCTCTGGCCTGATGCCCCACTCCTGCCTCACCCCAG
Seq C2 exon
CCTGCCCCGAGCCCCTGTTCAGTGAGCTAGGCCGCTCTCGTCTGGCAAAGGTGGTGAAGACGTTGAAGGAGATTCACCTTGCCTTCCTCCCCTACGAGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076944:ENST00000221283:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(23.4=100)
A:
NA
C2:
PF0099518=Sec1=PD(3.2=2.9),PF0099518=Sec1=FE(29.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTTCAGGCCCTGATCAAAG
R:
GGGAGGAAGGCAAGGTGAATC
Band lengths:
169-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains