HsaEX0062740 @ hg38
Exon Skipping
Gene
ENSG00000076944 | STXBP2
Description
syntaxin binding protein 2 [Source:HGNC Symbol;Acc:HGNC:11445]
Coordinates
chr19:7639731-7641005:+
Coord C1 exon
chr19:7639731-7639807
Coord A exon
chr19:7640731-7640809
Coord C2 exon
chr19:7640900-7641005
Length
79 bp
Sequences
Splice sites
3' ss Seq
GAGTGATCCACCTTCCCCAGTCG
3' ss Score
3.03
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
TTGTTGAAGACATCAACAAACGGCGGGAACCCATTCCCAGTCTGGAGGCCATTTATTTGCTGAGCCCCACGGAGAAG
Seq A exon
TCGGTTCAGGCCCTGATCAAAGACTTCCAGGGGACCCCGACTTTCACCTACAAAGCGGCCCATATCTTCTTCACCGACA
Seq C2 exon
CCTGCCCCGAGCCCCTGTTCAGTGAGCTAGGCCGCTCTCGTCTGGCAAAGGTGGTGAAGACGTTGAAGGAGATTCACCTTGCCTTCCTCCCCTACGAGGCCCAGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076944-'6-22,'6-19,13-22=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(22.5=100)
A:
PF0099518=Sec1=FE(23.4=100)
C2:
PF0099518=Sec1=PD(3.2=2.9),PF0099518=Sec1=FE(29.6=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGACATCAACAAACGGCGG
R:
CTCGTAGGGGAGGAAGGCAAG
Band lengths:
170-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development