MmuEX0045621 @ mm9
Exon Skipping
Gene
ENSMUSG00000004626 | Stxbp2
Description
syntaxin binding protein 2 [Source:MGI Symbol;Acc:MGI:107370]
Coordinates
chr8:3633291-3635530:+
Coord C1 exon
chr8:3633291-3633367
Coord A exon
chr8:3633848-3633926
Coord C2 exon
chr8:3635446-3635530
Length
79 bp
Sequences
Splice sites
3' ss Seq
CAGTAATCTCTCCTCCCCAGTCG
3' ss Score
5.88
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
TCGTGGAAGACATCAACAAACGGAGAGAACCCATTCCCAGCTTGGAGGCAATTTATTTGCTGAGTCCCACGGAGAAG
Seq A exon
TCGGTTCAGGCCCTGATTGCGGACTTCCAGGGAACACCAACCTTCACCTACAAAGCAGCCCATATCTTCTTCACTGACA
Seq C2 exon
GGGTCCAGAAGACACAGCCCAGCTGGCCCATGCTGTCCTGGCCAAGCTGAACGCCTTCAAGGCAGACACTCCCAGTCTGGGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004626_MULTIEX1-4/6=3-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.138
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(4.7=100)
A:
PF0099518=Sec1=FE(4.7=100)
C2:
PF0099518=Sec1=FE(5.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGGAAGACATCAACAAACGG
R:
ACTGGGAGTGTCTGCCTTGAA
Band lengths:
152-231
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: