BtaEX6038395 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009178 | STXBP2
Description
syntaxin binding protein 2 [Source:HGNC Symbol;Acc:HGNC:11445]
Coordinates
chr7:17709433-17709944:+
Coord C1 exon
chr7:17709433-17709509
Coord A exon
chr7:17709665-17709743
Coord C2 exon
chr7:17709841-17709944
Length
79 bp
Sequences
Splice sites
3' ss Seq
GAGTGATCCACCTTCCCCAGTCG
3' ss Score
3.03
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
TTGTGGAGGACATCAACAAAAGACGAGAACCCATCCCCAGCCTGGAGGCTATTTATCTGCTGAGCCCCACGGAGAAG
Seq A exon
TCGGTACAGGCCCTGATCGCAGATTTCCGGGGGACCCCGACCTTCACCTACAAAGCCGCACACGTCTTCTTCACCGACA
Seq C2 exon
CCTGCCCTGAGCCCCTGTTCAGTGAGCTGGGTCGCTCCCGTCTGGCAAAGGTGGTGAAGACGCTGAAAGAGATCCACCTTGCCTTCCTCCCATACGAAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009178-'5-5,'5-3,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(4.5=100)
A:
PF0099518=Sec1=FE(4.7=100)
C2:
PF0099518=Sec1=FE(6.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGGACATCAACAAAAGACGA
R:
TATGGGAGGAAGGCAAGGTGG
Band lengths:
168-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]