GgaEX6014909 @ galGal4
Exon Skipping
Gene
ENSGALG00000007196 | STXBP1
Description
syntaxin binding protein 1 [Source:HGNC Symbol;Acc:HGNC:11444]
Coordinates
chr17:2440220-2440906:+
Coord C1 exon
chr17:2440220-2440296
Coord A exon
chr17:2440448-2440526
Coord C2 exon
chr17:2440803-2440906
Length
79 bp
Sequences
Splice sites
3' ss Seq
CACTCCCTTCTCTCCTGCAGTCC
3' ss Score
9.73
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
TTGTGGAGGACATCAACAAGCGCCGGGAGCCGCTGCCCAGCCTGGAGGCTGTCTATCTCATCACACCCTCCGAGAAG
Seq A exon
TCCGTCCACTCTCTCATCAGTGACTTCAAGGACCCCCCCACCTCCAAGTACAGAGCAGCTCACGTCTTCTTCACCGACT
Seq C2 exon
CCTGCCCCGATGCCCTGTTCAATGAGCTGGTGAAGTCCCGTGCTGCCAAAGTCATCAAGACCCTGACTGAGATCAACATCGCCTTCCTGCCCTCCGAGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007196-'2-4,'2-3,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(4.5=100)
A:
PF0099518=Sec1=FE(4.7=100)
C2:
PF0099518=Sec1=FE(6.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGAGGACATCAACAAGCG
R:
GGCAGGAAGGCGATGTTGATC
Band lengths:
167-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]