MmuEX6100632 @ mm10
Exon Skipping
Gene
ENSMUSG00000026797 | Stxbp1
Description
syntaxin binding protein 1 [Source:MGI Symbol;Acc:MGI:107363]
Coordinates
chr2:32817286-32819910:-
Coord C1 exon
chr2:32819834-32819910
Coord A exon
chr2:32818427-32818505
Coord C2 exon
chr2:32817286-32817389
Length
79 bp
Sequences
Splice sites
3' ss Seq
CCCTTCCCCCCTATTTACAGTCT
3' ss Score
8.77
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
TTGTGGAGGATATCAACAAGCGCCGAGAGCCACTCCCCAGCCTGGAGGCCGTGTACCTCATCACCCCATCTGAGAAG
Seq A exon
TCTGTCCACTCTCTGATCAGTGATTTTAAGGACCCGCCGACTGCTAAATATCGGGCTGCGCATGTGTTCTTCACAGACT
Seq C2 exon
CGTGTCCAGATGCCCTATTTAACGAGCTGGTAAAATCCCGAGCAGCCAAAGTCATCAAGACGCTGACGGAAATCAACATTGCGTTTCTCCCCTATGAGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026797-'21-9,'21-7,22-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.117 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(25.0=100)
A:
PF0099518=Sec1=FE(26.0=100)
C2:
PF0099518=Sec1=FE(6.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATCAACAAGCGCCGAGAGC
R:
GGACTCATAGGGGAGAAACGC
Band lengths:
169-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types