BtaEX0035086 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003525 | STXBP1
Description
Bos taurus syntaxin binding protein 1 (STXBP1), mRNA. [Source:RefSeq mRNA;Acc:NM_174619]
Coordinates
chr11:98358860-98368362:+
Coord C1 exon
chr11:98358860-98358909
Coord A exon
chr11:98364876-98364954
Coord C2 exon
chr11:98368214-98368362
Length
79 bp
Sequences
Splice sites
3' ss Seq
CCCTTTTTCCCTCTCCACAGTCC
3' ss Score
12.84
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
AGATCATGCATGATGTGATAAAGAAGGTGAAAAAGAAGGGAGAATGGAAG
Seq A exon
TCCGTCCACTCTCTCATCAGTGACTTTAAGGACCCGCCAACCGCCAAGTACCGGGCTGCACATGTCTTCTTCACTGACT
Seq C2 exon
GTGTATTCCTTGGACTCTGCTGACTCTTTCCAAAGCTTCTACAGTCCCCACAAGGCTCAGATGAAGAATCCGATCCTGGAGCGCCTGGCGGAGCAGATCGCAACTCTGTGCGCCACCCTGAAGGAGTACCCAGCCGTGCGGTACCGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003525_MULTIEX1-3/4=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0099518=Sec1=PU(0.2=5.9)
A:
PF0099518=Sec1=FE(4.7=100)
C2:
PF0099518=Sec1=FE(8.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCATGATGTGATAAAGAAGGTGA
R:
CTGGGTACTCCTTCAGGGTGG
Band lengths:
177-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development