DreEX6083590 @ danRer10
Exon Skipping
Gene
ENSDARG00000001994 | stxbp1a
Description
syntaxin binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-050626-106]
Coordinates
chr21:13790725-13792605:+
Coord C1 exon
chr21:13790725-13790801
Coord A exon
chr21:13791518-13791596
Coord C2 exon
chr21:13792502-13792605
Length
79 bp
Sequences
Splice sites
3' ss Seq
TGTTGTGCTTCTCTTACCAGTCT
3' ss Score
9.13
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
TTGTTGAAGACATCATGAAACGGAGAGAACCTCTTCCCTCACTGGAGGCCATTTACCTGATCACCCCAACTGACAAG
Seq A exon
TCTGTGCAGACTCTCATCAATGACTTCAAAGACCCCCATTCAGCCAAGTATAAAGGAGCTCATGTGTTCTTCACTGACT
Seq C2 exon
CTTGCCCTGACCCCCTGTTTAATGAAGTGGTGAAGAGCCGTGCCTCCAAAACCATTAAAACCCTAAATGAGATCAACATCGCCTTCCTGCCCTACGAGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001994-'4-6,'4-4,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(4.5=100)
A:
PF0099518=Sec1=FE(4.7=100)
C2:
PF0099518=Sec1=FE(6.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATGAAACGGAGAGAACCTCT
R:
GGGACTCGTAGGGCAGGAAG
Band lengths:
167-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]