HsaEX0062731 @ hg38
Exon Skipping
Gene
ENSG00000136854 | STXBP1
Description
syntaxin binding protein 1 [Source:HGNC Symbol;Acc:HGNC:11444]
Coordinates
chr9:127658375-127661205:+
Coord C1 exon
chr9:127658375-127658451
Coord A exon
chr9:127660030-127660108
Coord C2 exon
chr9:127661102-127661205
Length
79 bp
Sequences
Splice sites
3' ss Seq
TTTTTCCCCCCCATCCACAGTCC
3' ss Score
10.28
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
TTGTGGAAGATATCAATAAGCGCAGAGAGCCGCTCCCCAGCCTGGAGGCTGTGTATCTCATCACTCCATCCGAGAAG
Seq A exon
TCCGTCCACTCTCTCATCAGTGACTTTAAGGACCCGCCGACTGCTAAATACCGGGCTGCACACGTCTTCTTCACTGACT
Seq C2 exon
CTTGTCCAGATGCCCTGTTTAATGAACTGGTAAAATCCCGAGCAGCCAAAGTCATCAAAACTCTGACGGAAATCAATATTGCATTTCTCCCGTATGAATCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136854-'20-37,'20-34,21-37
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(18.4=100)
A:
PF0099518=Sec1=FE(19.1=100)
C2:
PF0099518=Sec1=PD(28.0=93.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAATAAGCGCAGAGAGCCG
R:
GGGATTCATACGGGAGAAATGCA
Band lengths:
168-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development