RnoEX0087368 @ rn6
Exon Skipping
Gene
ENSRNOG00000000994 | Stxbp2
Description
syntaxin binding protein 2 [Source:RGD Symbol;Acc:619967]
Coordinates
chr12:2182120-2183242:+
Coord C1 exon
chr12:2182120-2182196
Coord A exon
chr12:2182994-2183042
Coord C2 exon
chr12:2183139-2183242
Length
49 bp
Sequences
Splice sites
3' ss Seq
CTCTGATTGCGGACTTCCAGGGG
3' ss Score
5.62
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
TTGTGGAAGACATCAACAAACGGAGAGAACCCATTCCCAGCTTGGAGGCAATTTATTTGCTGAGTCCCACAGAGAAG
Seq A exon
GGGACACCAACCTTCACCTACAAAGCAGCCCATATCTTCTTCACGGACA
Seq C2 exon
CGTGCCCCGAGCCCTTGTTCAGTGAACTGGGCCGCTCTCGCCTGGCGAAGGTGGTGAAGACACTGAAAGAGATCCACCTCGCCTTCCTCCCCTATGAGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000994-'5-6,'5-5,6-6
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(4.5=100)
A:
PF0099518=Sec1=FE(4.7=100)
C2:
PF0099518=Sec1=FE(6.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACCCATTCCCAGCTTGGAG
R:
AGGCGAGGTGGATCTCTTTCA
Band lengths:
135-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]