HsaEX0062740 @ hg19
Exon Skipping
Gene
ENSG00000076944 | STXBP2
Description
syntaxin binding protein 2 [Source:HGNC Symbol;Acc:11445]
Coordinates
chr19:7704617-7705889:+
Coord C1 exon
chr19:7704617-7704693
Coord A exon
chr19:7705617-7705695
Coord C2 exon
chr19:7705786-7705889
Length
79 bp
Sequences
Splice sites
3' ss Seq
GAGTGATCCACCTTCCCCAGTCG
3' ss Score
3.03
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
TTGTTGAAGACATCAACAAACGGCGGGAACCCATTCCCAGTCTGGAGGCCATTTATTTGCTGAGCCCCACGGAGAAG
Seq A exon
TCGGTTCAGGCCCTGATCAAAGACTTCCAGGGGACCCCGACTTTCACCTACAAAGCGGCCCATATCTTCTTCACCGACA
Seq C2 exon
CCTGCCCCGAGCCCCTGTTCAGTGAGCTAGGCCGCTCTCGTCTGGCAAAGGTGGTGAAGACGTTGAAGGAGATTCACCTTGCCTTCCTCCCCTACGAGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076944_MULTIEX1-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.012
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(22.3=100)
A:
PF0099518=Sec1=FE(4.2=100)
C2:
PF0099518=Sec1=PD(3.2=2.9),PF0099518=Sec1=FE(29.6=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGACATCAACAAACGGCGG
R:
CTCGTAGGGGAGGAAGGCAAG
Band lengths:
170-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)