BtaINT0143082 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007330 | STXBP3
Description
syntaxin binding protein 3 [Source:HGNC Symbol;Acc:HGNC:11446]
Coordinates
chr3:34691350-34693718:-
Coord C1 exon
chr3:34693626-34693718
Coord A exon
chr3:34691436-34693625
Coord C2 exon
chr3:34691350-34691435
Length
2190 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
3' ss Seq
GGATTTCTTATCTTCCCTAGGAT
3' ss Score
8.67
Exon sequences
Seq C1 exon
TCTCAACAAGGCAAACCATCAAGAAAGGATCGGTCTGCAGAAGAAACTTTTCAACTGTCTAGATGGACACCTTTCATCAAAGATATTTTGGAG
Seq A exon
GTAAAATTCATTAAATTTTATTTATACTCTGCCCTTTGTAGAATATTTTTTACTCTCTGTCCATTTATCTGTCAGTTTGAGCATATCTTTGGGTCAGGAATTATCTGCAGTACTGAGAGGGTTCACAAAAGAAGGCTGTATCTGATATCAAGGGAGGAGAGGAAGCTTTTGAAAGTTCTCCCTTAAAGACTGCCAATTCATACCACTAATTGCCTCAAAATAAATTTAAAAAGATAAGCACAGGCATGCTTTATGAAAAAGACTCTGTTGTTTGAAATTACTATGTAGCAGAAATATGAATAATTTAGTTGAATGAAAGTTCAACAAAACAACATTTTTTGTGATCACTATTAGAGTGTTAAATTCCAATATTCTTAGAAATGGATTTGTGATTAAAATGTAAACCTCACTATCGTTTGCTTTTATAATCGACAGATGCCTGATTCTTTTAGTACTGTTTGCTTTTAGAAAATAATTTTCAATTATAGGAAATTAGAAAATGAACTAATAATTGCATTATGAGCTCAATAAAGTCATAATCAGTTCTATTTATTCCAATTTGCCTTTAACTTATTAAACATTAATTTCTACTTTCCTTTGGAAATTGTGTACAGTTTATCCCATGATTTTTCTGTTTTGCTTGACTAATTCTATGTCATTTACACATGCTTGATTTAAGATGAAGATTTCAGAGTTTAGACTTTTCCCTGCAATGTAAGATTTTTTTTTTCCTGATCTGTAACAAGAATGTGGAACTAAGGAGTTTTTCTTTGCTATTGATAGTATTTTAAAAATAAGAATTGACCTTCTCAAACCTTTTAACAAGGATTTACATGTTAAATTCAAAAACTCCACTTTACTATAGTAGCAACCTAAGGCCTTTGGGGTTCTCCTGAAGCTTTGATTCTTCACATCTTGCAGTCTTATTGAAATACTCTAGGACTACGGACAGAGAAGGCGATGGTACCCCACTTCAGTACTCTTGCCTGGAAAATCCCATGGATGGAAGAGCCTGGTGGCTGCAGTCCATGGGGTCTCTAAGAGTCAGACACGACTGAGCGACTTCACTTTCACTTTTCACTTTCATGCATTGGAGAAGGAAATGGCAACCCACTCCAGCGTTCTTGCCTGGAGAATCCCAGGGACAGGGGAGCCTGGTGGGCTGCAGTCTATGGGGTCGCACAGAGTTGGACATGACTGAAACGACTTAGCAGCAGCAGCAGCAGGACTACAAAGGACCTTGTGTCCATTCCTACTTATTGTTACTGTTTGTGCAACCATGTTCTAAAGCTGCGGTGTTCTAAATCGGTGGTCTTCAAACTTTTAATTACGTATACTTTCTCATAATAAATGTGACCAGGAGCCTACAGTATGTGGCTGTTTATAAACTGTGTAAGTGCTGTACTGATTAAAACACTATACATTTATTTATAAGCTATATAAATGCTGTACTGATCAAACACTATGTGTGTATTATATACATACACATAAATATCGTAAGATGTTAACCGTAAAAAGAAGCAAACATTTTTAAATGAAAAAGAAAGCTTCTTCCATCTCATCAGATAGTCTTGAATACACCTAGGCCAGGATGCATGTTTTGTTTTAAAGCTGTCACTGTGAAGGGCAAAGACTTCACTGGTGGCTCAGACGGTAAGGTGTCTGCCTACAATGCAGGAGACCGAGGTTCAGTCCCTGCATCGGGAAGATCTCCTGGAGGAGGAAATGGCAACCCACTCCAGTATTCTTGCCTGGAAAATCCCATGGACGAAGGAGCCTGGTAGGCTATTGTCCATGGGGTCGCAAAGAGTTGGACACGACTGAACGACTTCAGCTATGAAAGGCAAGGCCTGGACTCTGGTAGCCTAAGAAGTCTGTCAGGGTTAAGATGGTATTTACAAACCCCTAGCATTCTCGAGATAAAGACCCTGATAAAGTACCTGGGATTTTTACACCAAAATGGTAACCCTCTAAATAAGAAATGTAGGCATGCAATAAATATTGGTTTAATAATTGCATTAATTTTGTAGCAAATAAGATTTGTGAGTTTCAAAAAGAGGGCTAACCTTATTTTATTAAATATGTATCCTTGTGGTCTTTAATTGTAAATACAAGTTTTGAGTTTTATGTAAAACAAACAAAATATTGGAGTTTATAGTATCTTCTTGATGGATTTCTTATCTTCCCTAG
Seq C2 exon
GATGCCATTGATAACAGATTAGATTCAAAAGAGTGGCCATATTGTTCCCAGTGCCCAGCAGTCTGGAATGGCTCAGGAGCTGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007330:ENSBTAT00000009642:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.452 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(5.5=100)
A:
NA
C2:
PF0099518=Sec1=FE(5.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]